RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W TMA46Q12000 345 aaKnown RBP2.13□□□□□ -2.07
PRP42YDR235W RKM4Q12504 494 aa2.13□□□□□ -2.07
PRP42YDR235W YKL107WP34251 309 aa2.12□□□□□ -2.07
PRP42YDR235W YBR053CP38235 358 aa2.12□□□□□ -2.07
PRP42YDR235W RPP1P38786 293 aa2.12□□□□□ -2.07
PRP42YDR235W STM1P39015 273 aaKnown RBP2.12□□□□□ -2.07
PRP42YDR235W NOT3P06102 836 aaKnown RBP2.11□□□□□ -2.07
PRP42YDR235W TUB3P09734 445 aaKnown RBP2.11□□□□□ -2.07
PRP42YDR235W YJL206CP39529 758 aa2.11□□□□□ -2.07
PRP42YDR235W YEL020CP39994 560 aa2.11□□□□□ -2.07
PRP42YDR235W SDP1P40479 209 aa2.11□□□□□ -2.07
PRP42YDR235W AMA1P50082 593 aa2.11□□□□□ -2.07
PRP42YDR235W SSL2Q00578 843 aa2.11□□□□□ -2.07
PRP42YDR235W SRP1Q02821 542 aaKnown RBP2.11□□□□□ -2.07
PRP42YDR235W TRP2P00899 507 aaKnown RBP2.1□□□□□ -2.07
PRP42YDR235W FBP1P09201 348 aa2.1□□□□□ -2.07
PRP42YDR235W EMP70P32802 667 aa2.1□□□□□ -2.07
PRP42YDR235W MEP2P41948 499 aa2.1□□□□□ -2.07
PRP42YDR235W NET1P47035 1189 aa2.1□□□□□ -2.07
PRP42YDR235W GYP7P48365 746 aa2.1□□□□□ -2.07
PRP42YDR235W NAB6Q03735 1134 aaKnown RBP RIP-Chip data2.1□□□□□ -2.07not detected
PRP42YDR235W SGO1Q08490 590 aa2.1□□□□□ -2.07
PRP42YDR235W RPN13O13563 156 aa2.09□□□□□ -2.07
PRP42YDR235W VPS34P22543 875 aa2.09□□□□□ -2.07
PRP42YDR235W STE13P33894 931 aa2.09□□□□□ -2.07
PRP42YDR235W TYW3P53177 273 aa2.09□□□□□ -2.07
PRP42YDR235W IRC13Q08630 104 aa2.09□□□□□ -2.07
PRP42YDR235W RLF2Q12495 606 aa2.09□□□□□ -2.07
PRP42YDR235W NOP1P15646 327 aaKnown RBP2.09□□□□□ -2.08
PRP42YDR235W CDC12P32468 407 aaKnown RBP2.09□□□□□ -2.08
PRP42YDR235W RSP5P39940 809 aaKnown RBP2.09□□□□□ -2.08
PRP42YDR235W LTP1P40347 161 aa2.09□□□□□ -2.08
PRP42YDR235W CIR2Q08822 631 aa2.09□□□□□ -2.08
PRP42YDR235W TAF3Q12297 353 aa2.09□□□□□ -2.08
PRP42YDR235W STE4P18851 423 aa2.08□□□□□ -2.08
PRP42YDR235W YIL108WP40483 696 aaKnown RBP2.08□□□□□ -2.08
PRP42YDR235W VPS30Q02948 557 aa2.08□□□□□ -2.08
PRP42YDR235W HIS7P33734 552 aaKnown RBP2.07□□□□□ -2.08
PRP42YDR235W YKR078WP36158 585 aaKnown RBP2.07□□□□□ -2.08
PRP42YDR235W CTF8P38877 133 aa2.07□□□□□ -2.08
PRP42YDR235W SNF7P39929 240 aaKnown RBP2.07□□□□□ -2.08
PRP42YDR235W CCT7P42943 550 aaKnown RBP2.07□□□□□ -2.08
PRP42YDR235W SMX3P54999 86 aaPredicted RBP2.07□□□□□ -2.08
PRP42YDR235W OSW1Q08692 278 aa2.07□□□□□ -2.08
PRP42YDR235W YLR149CQ99296 730 aa2.07□□□□□ -2.08
PRP42YDR235W CDC48P25694 835 aaKnown RBP2.06□□□□□ -2.08
PRP42YDR235W MCM2P29469 868 aa2.06□□□□□ -2.08
PRP42YDR235W RPD3P32561 433 aa2.06□□□□□ -2.08
PRP42YDR235W XBP1P40489 647 aa2.06□□□□□ -2.08
PRP42YDR235W YIR042CP40586 236 aa2.06□□□□□ -2.08
PRP42YDR235W YLR225CQ05948 407 aaKnown RBP2.06□□□□□ -2.08
PRP42YDR235W TSL1P38427 1098 aaKnown RBP2.06□□□□□ -2.08
PRP42YDR235W PAC2P39937 518 aa2.06□□□□□ -2.08
PRP42YDR235W FMP52P40008 231 aa2.06□□□□□ -2.08
PRP42YDR235W HSV2P50079 448 aaPredicted RBP2.06□□□□□ -2.08
PRP42YDR235W TEL2P53038 688 aa2.06□□□□□ -2.08
PRP42YDR235W PRP4P20053 465 aaKnown RBP2.05□□□□□ -2.08
PRP42YDR235W PIN4P34217 668 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
PRP42YDR235W SSF1P38789 453 aaPredicted RBP2.05□□□□□ -2.08
PRP42YDR235W YHR078WP38799 552 aa2.05□□□□□ -2.08
PRP42YDR235W NDC80P40460 691 aa2.05□□□□□ -2.08
PRP42YDR235W GIS2P53849 153 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
PRP42YDR235W EEB1Q02891 456 aa2.05□□□□□ -2.08
PRP42YDR235W ERG11P10614 530 aa2.04□□□□□ -2.08
PRP42YDR235W SEC20P28791 383 aa2.04□□□□□ -2.08
PRP42YDR235W VHR1P40522 640 aa2.04□□□□□ -2.08
PRP42YDR235W YKE2P52553 114 aa2.04□□□□□ -2.08
PRP42YDR235W SPO20Q04359 397 aa2.04□□□□□ -2.08
PRP42YDR235W SPR28Q04921 423 aa2.04□□□□□ -2.08
PRP42YDR235W DUS3Q06053 668 aaKnown RBP2.04□□□□□ -2.08
PRP42YDR235W PGK1P00560 416 aaKnown RBP2.03□□□□□ -2.08
PRP42YDR235W TYE7P33122 291 aaPredicted RBP2.03□□□□□ -2.08
PRP42YDR235W DUT1P33317 147 aa2.03□□□□□ -2.08
PRP42YDR235W YBR238CP38330 731 aaKnown RBP2.03□□□□□ -2.08
PRP42YDR235W GGA2P38817 585 aaKnown RBP2.03□□□□□ -2.08
PRP42YDR235W PKH1Q03407 766 aa2.03□□□□□ -2.08
PRP42YDR235W SLK19Q08581 821 aaKnown RBP2.03□□□□□ -2.08
PRP42YDR235W MPH2P0CD99 609 aa2.02□□□□□ -2.09
PRP42YDR235W LAT1P12695 482 aaKnown RBP2.02□□□□□ -2.09
PRP42YDR235W BCD1P38772 366 aa2.02□□□□□ -2.09
PRP42YDR235W ASI2P53895 289 aa2.02□□□□□ -2.09
PRP42YDR235W ESF1Q06344 628 aaKnown RBP2.02□□□□□ -2.09
PRP42YDR235W CLN2P20438 545 aa2.02□□□□□ -2.09
PRP42YDR235W NGG1P32494 702 aa2.02□□□□□ -2.09
PRP42YDR235W GLG1P36143 616 aa2.02□□□□□ -2.09
PRP42YDR235W MGE1P38523 228 aa2.02□□□□□ -2.09
PRP42YDR235W HRB1P38922 454 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09not detected
PRP42YDR235W IPL1P38991 367 aa2.02□□□□□ -2.09
PRP42YDR235W CTR1P49573 406 aa2.02□□□□□ -2.09
PRP42YDR235W YAP1802P53309 568 aa2.02□□□□□ -2.09
PRP42YDR235W NRG1Q03125 231 aa2.02□□□□□ -2.09
PRP42YDR235W ASM4Q05166 528 aa2.02□□□□□ -2.09
PRP42YDR235W NUP1P20676 1076 aa2.01□□□□□ -2.09
PRP42YDR235W RFA1P22336 621 aaKnown RBP2.01□□□□□ -2.09
PRP42YDR235W CEP3P40969 608 aa2.01□□□□□ -2.09
PRP42YDR235W YKR011CQ02209 353 aa2.01□□□□□ -2.09
PRP42YDR235W GEP3Q08622 556 aa2.01□□□□□ -2.09
PRP42YDR235W NPP1P25353 742 aa2□□□□□ -2.09
PRP42YDR235W BDH2P39713 417 aa2□□□□□ -2.09
PRP42YDR235W HOS4P40480 1083 aa2□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 268.8 ms