RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	HIS5	P07172	385 aa		4.98	□□□□□ -1.61
RUB1	YDR139C	URA1	P28272	314 aa	Predicted RBP	4.98	□□□□□ -1.61
RUB1	YDR139C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
RUB1	YDR139C	HSV2	P50079	448 aa	Predicted RBP	4.98	□□□□□ -1.61
RUB1	YDR139C	DAM1	P53267	343 aa		4.98	□□□□□ -1.61
RUB1	YDR139C	YAP6	Q03935	383 aa		4.98	□□□□□ -1.61
RUB1	YDR139C	RPS9A	O13516	197 aa	Known RBP	4.97	□□□□□ -1.61
RUB1	YDR139C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
RUB1	YDR139C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
RUB1	YDR139C	THI4	P32318	326 aa		4.97	□□□□□ -1.61
RUB1	YDR139C	PPG1	P32838	368 aa		4.97	□□□□□ -1.61
RUB1	YDR139C	RRP14	P36080	434 aa	Known RBP	4.97	□□□□□ -1.61
RUB1	YDR139C	GYP8	P43570	497 aa		4.97	□□□□□ -1.61
RUB1	YDR139C	RNH70	P53331	553 aa		4.97	□□□□□ -1.61
RUB1	YDR139C	YGR283C	P53336	341 aa	Predicted RBP	4.97	□□□□□ -1.61
RUB1	YDR139C	NOG2	P53742	486 aa	Known RBP	4.97	□□□□□ -1.61
RUB1	YDR139C	ESC8	Q08119	714 aa		4.97	□□□□□ -1.61
RUB1	YDR139C	YLR358C	O13565	187 aa		4.96	□□□□□ -1.62
RUB1	YDR139C	TYE7	P33122	291 aa	Predicted RBP	4.96	□□□□□ -1.62
RUB1	YDR139C	NMD2	P38798	1089 aa	Known RBP	4.96	□□□□□ -1.62
RUB1	YDR139C	URM1	P40554	99 aa	Predicted RBP	4.96	□□□□□ -1.62
RUB1	YDR139C	CEP3	P40969	608 aa		4.96	□□□□□ -1.62
RUB1	YDR139C	CHA4	P43634	648 aa		4.96	□□□□□ -1.62
RUB1	YDR139C	HDA1	P53973	706 aa		4.96	□□□□□ -1.62
RUB1	YDR139C	POB3	Q04636	552 aa	Known RBP	4.96	□□□□□ -1.62
RUB1	YDR139C	YLR224W	Q05947	369 aa		4.96	□□□□□ -1.62
RUB1	YDR139C	MET6	P05694	767 aa	Known RBP	4.95	□□□□□ -1.62
RUB1	YDR139C	RAD53	P22216	821 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	SPC29	P33419	253 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	YIL108W	P40483	696 aa	Known RBP	4.95	□□□□□ -1.62
RUB1	YDR139C	YKR011C	Q02209	353 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	ATP25	Q03153	612 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	YDR514C	Q04408	483 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	REH1	Q06709	432 aa		4.95	□□□□□ -1.62
RUB1	YDR139C	DAL7	P21826	554 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	SED4	P25365	1065 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	MSH2	P25847	964 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	RPD3	P32561	433 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	PLB1	P39105	664 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	MAL11	P53048	616 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	PUS2	P53167	370 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	ALG12	P53730	551 aa		4.94	□□□□□ -1.62
RUB1	YDR139C	CLU1	Q03690	1277 aa	Known RBP	4.94	□□□□□ -1.62
RUB1	YDR139C	SSL1	Q04673	461 aa	Predicted RBP	4.94	□□□□□ -1.62
RUB1	YDR139C	WHI4	Q07655	649 aa	Known RBP	4.94	□□□□□ -1.62
RUB1	YDR139C	STE11	P23561	717 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	GIP4	P39732	760 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	TAD1	P53065	400 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	MET7	Q08645	548 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	UPC2	Q12151	913 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	AIM44	Q99299	758 aa		4.93	□□□□□ -1.62
RUB1	YDR139C	FBP1	P09201	348 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	GSY1	P23337	708 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	CYS3	P31373	394 aa	Known RBP	4.92	□□□□□ -1.62
RUB1	YDR139C	LST4	P34239	828 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	FLR1	P38124	548 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	NCS6	P53088	359 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	UGO1	Q03327	502 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	TMA10	Q06177	86 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	NPC2	Q12408	173 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	MDM12	Q92328	271 aa		4.92	□□□□□ -1.62
RUB1	YDR139C	MNN10	P50108	393 aa	Known RBP	4.91	□□□□□ -1.62
RUB1	YDR139C	KCS1	Q12494	1050 aa		4.91	□□□□□ -1.62
RUB1	YDR139C	STE14	P32584	239 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	PEX6	P33760	1030 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	SAP190	P36123	1033 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	CTF8	P38877	133 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
RUB1	YDR139C	DSS1	P39112	969 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	SDP1	P40479	209 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	MCM6	P53091	1017 aa	Known RBP	4.9	□□□□□ -1.63
RUB1	YDR139C	RSC3	Q06639	885 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	YOR022C	Q12204	715 aa		4.9	□□□□□ -1.63
RUB1	YDR139C	PRC1	P00729	532 aa		4.89	□□□□□ -1.63
RUB1	YDR139C	YCL002C	P25565	263 aa		4.89	□□□□□ -1.63
RUB1	YDR139C	MTC2	P34246	357 aa		4.89	□□□□□ -1.63
RUB1	YDR139C	SET5	P38890	526 aa	Known RBP	4.89	□□□□□ -1.63
RUB1	YDR139C	TY4A-J	P47023	414 aa		4.89	□□□□□ -1.63
RUB1	YDR139C	ZDS1	P50111	915 aa	Known RBP	4.89	□□□□□ -1.63
RUB1	YDR139C	LRS4	Q04087	347 aa	Known RBP	4.89	□□□□□ -1.63
RUB1	YDR139C	NTG2	Q08214	380 aa		4.89	□□□□□ -1.63
RUB1	YDR139C	DIF1	O13577	133 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	MEF1	P25039	761 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	VBA3	P25594	458 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	PER1	P25625	357 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	CTS1	P29029	562 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	STO1	P34160	861 aa	Known RBP	4.88	□□□□□ -1.63
RUB1	YDR139C	YHR078W	P38799	552 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	RLP7	P40693	322 aa	Known RBP	4.88	□□□□□ -1.63
RUB1	YDR139C	ALY2	P47029	1046 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	DUS1	P53759	423 aa	Known RBP	4.88	□□□□□ -1.63
RUB1	YDR139C	GUP2	Q08929	609 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	HAL9	Q12180	1030 aa		4.88	□□□□□ -1.63
RUB1	YDR139C	CDC9	P04819	755 aa		4.87	□□□□□ -1.63
RUB1	YDR139C	SHR5	P41912	237 aa		4.87	□□□□□ -1.63
RUB1	YDR139C	EXG2	P52911	562 aa		4.87	□□□□□ -1.63
RUB1	YDR139C	YBR182C-A	Q8TGU6	64 aa		4.87	□□□□□ -1.63
RUB1	YDR139C	SHM2	P37291	469 aa	Known RBP	4.86	□□□□□ -1.63
RUB1	YDR139C	MNN1	P39106	762 aa		4.86	□□□□□ -1.63
RUB1	YDR139C	CAF16	P43569	289 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 32.9 ms