RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeastyeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRM3YDL112W MSH4P40965 878 aaPredicted RBP2.11□□□□□ -2.07
TRM3YDL112W YFL040WP43562 540 aa2.11□□□□□ -2.07
TRM3YDL112W JJJ3P47138 172 aa2.11□□□□□ -2.07
TRM3YDL112W GTF1P53260 183 aaPredicted RBP2.11□□□□□ -2.07
TRM3YDL112W RNH70P53331 553 aa2.11□□□□□ -2.07
TRM3YDL112W TIF35Q04067 274 aaKnown RBP2.11□□□□□ -2.07
TRM3YDL112W PPM2Q08282 695 aa2.11□□□□□ -2.07
TRM3YDL112W SOG2Q08817 791 aa2.11□□□□□ -2.07
TRM3YDL112W RPS4AP0CX35 261 aaKnown RBP2.11□□□□□ -2.07
TRM3YDL112W RPS4BP0CX36 261 aaKnown RBP2.11□□□□□ -2.07
TRM3YDL112W LCB1P25045 558 aaKnown RBP2.11□□□□□ -2.07
TRM3YDL112W AFG2P32794 780 aa2.11□□□□□ -2.07
TRM3YDL112W EXO5P38289 585 aa2.11□□□□□ -2.07
TRM3YDL112W NIT1P40447 199 aa2.11□□□□□ -2.07
TRM3YDL112W TUS1Q06412 1307 aa2.11□□□□□ -2.07
TRM3YDL112W CDC34P14682 295 aa2.1□□□□□ -2.07
TRM3YDL112W KIP1P28742 1111 aa2.1□□□□□ -2.07
TRM3YDL112W MGM1P32266 881 aa2.1□□□□□ -2.07
TRM3YDL112W RER2P35196 286 aa2.1□□□□□ -2.07
TRM3YDL112W VBA5P36172 582 aa2.1□□□□□ -2.07
TRM3YDL112W RTR1P40084 226 aaPredicted RBP2.1□□□□□ -2.07
TRM3YDL112W NOP2P40991 618 aaKnown RBP2.1□□□□□ -2.07
TRM3YDL112W NAN1Q02931 896 aaKnown RBP2.1□□□□□ -2.07
TRM3YDL112W THI22Q06490 572 aa2.1□□□□□ -2.07
TRM3YDL112W MRP7P12687 371 aa2.1□□□□□ -2.07
TRM3YDL112W YDL124WQ07551 312 aaKnown RBP2.1□□□□□ -2.07
TRM3YDL112W YOL098CQ12496 1037 aa2.1□□□□□ -2.07
TRM3YDL112W CBP1P07252 654 aa2.1□□□□□ -2.07
TRM3YDL112W PIF1P07271 859 aa2.1□□□□□ -2.07
TRM3YDL112W MKK2P32491 506 aa2.1□□□□□ -2.07
TRM3YDL112W STV1P37296 890 aa2.1□□□□□ -2.07
TRM3YDL112W PES4P39684 611 aa2.1□□□□□ -2.07
TRM3YDL112W YPL062WQ02781 134 aa2.1□□□□□ -2.07
TRM3YDL112W ERR1P0CX10 437 aa2.1□□□□□ -2.07
TRM3YDL112W ERR2P0CX11 437 aa2.1□□□□□ -2.07
TRM3YDL112W ERG7P38604 731 aa2.1□□□□□ -2.07
TRM3YDL112W HUL4P40985 892 aa2.1□□□□□ -2.07
TRM3YDL112W RPT4P53549 437 aaKnown RBP2.1□□□□□ -2.07
TRM3YDL112W PCL8Q08966 492 aa2.1□□□□□ -2.07
TRM3YDL112W ICL2Q12031 575 aa2.1□□□□□ -2.07
TRM3YDL112W CYC7P00045 113 aa2.09□□□□□ -2.07
TRM3YDL112W PHR1P05066 565 aaKnown RBP RIP-Chip data2.09□□□□□ -2.07not detected
TRM3YDL112W CAF20P12962 161 aaKnown RBP2.09□□□□□ -2.07
TRM3YDL112W SEA4P38164 1038 aa2.09□□□□□ -2.07
TRM3YDL112W GUP1P53154 560 aa2.09□□□□□ -2.07
TRM3YDL112W SRT1Q03175 343 aa2.09□□□□□ -2.07
TRM3YDL112W SPO75Q07798 868 aa2.09□□□□□ -2.07
TRM3YDL112W SSF2Q12153 453 aaPredicted RBP2.09□□□□□ -2.07
TRM3YDL112W YLL054CQ12244 843 aa2.09□□□□□ -2.07
TRM3YDL112W CYB2P00175 591 aa2.09□□□□□ -2.07
TRM3YDL112W SNF3P10870 884 aa2.09□□□□□ -2.07
TRM3YDL112W PER1P25625 357 aa2.09□□□□□ -2.07
TRM3YDL112W VPS4P52917 437 aa2.09□□□□□ -2.07
TRM3YDL112W YRB30P53107 440 aaPredicted RBP2.09□□□□□ -2.07
TRM3YDL112W THI3Q07471 609 aa2.09□□□□□ -2.07
TRM3YDL112W PIN2Q12057 282 aa2.09□□□□□ -2.07
TRM3YDL112W TY4B-PA0A0B7P3V8 1104 aa2.09□□□□□ -2.08
TRM3YDL112W MET6P05694 767 aaKnown RBP2.09□□□□□ -2.08
TRM3YDL112W APL1P27351 700 aa2.09□□□□□ -2.08
TRM3YDL112W MAL31P38156 614 aa2.09□□□□□ -2.08
TRM3YDL112W UBP12P39538 1254 aa2.09□□□□□ -2.08
TRM3YDL112W CEP3P40969 608 aa2.09□□□□□ -2.08
TRM3YDL112W YFH7P43591 353 aa2.09□□□□□ -2.08
TRM3YDL112W IRC4Q03036 179 aa2.09□□□□□ -2.08
TRM3YDL112W GIN4Q12263 1142 aa2.09□□□□□ -2.08
TRM3YDL112W TY4A-HQ6Q5P6 413 aa2.09□□□□□ -2.08
TRM3YDL112W ECM29P38737 1868 aa2.09□□□□□ -2.08
TRM3YDL112W MOT1P32333 1867 aa2.08□□□□□ -2.08
TRM3YDL112W RPS19AP07280 144 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W RPS19BP07281 144 aaPredicted RBP2.08□□□□□ -2.08
TRM3YDL112W YER152CP10356 443 aa2.08□□□□□ -2.08
TRM3YDL112W RAD53P22216 821 aa2.08□□□□□ -2.08
TRM3YDL112W DSE4P53753 1117 aa2.08□□□□□ -2.08
TRM3YDL112W EEB1Q02891 456 aa2.08□□□□□ -2.08
TRM3YDL112W FCP1Q03254 732 aa2.08□□□□□ -2.08
TRM3YDL112W VPS64Q03944 604 aa2.08□□□□□ -2.08
TRM3YDL112W RTT109Q07794 436 aa2.08□□□□□ -2.08
TRM3YDL112W TY1A-NL1Q12391 440 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W AIM44Q99299 758 aa2.08□□□□□ -2.08
TRM3YDL112W RPS9AO13516 197 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W CHS2P14180 963 aa2.08□□□□□ -2.08
TRM3YDL112W OCT1P35999 772 aa2.08□□□□□ -2.08
TRM3YDL112W RIM11P38615 370 aa2.08□□□□□ -2.08
TRM3YDL112W MMM1P41800 426 aa2.08□□□□□ -2.08
TRM3YDL112W YHL012WP38709 493 aa2.08□□□□□ -2.08
TRM3YDL112W VAB2P40003 282 aa2.08□□□□□ -2.08
TRM3YDL112W NUP82P40368 713 aa2.08□□□□□ -2.08
TRM3YDL112W BUD9P53226 547 aa2.08□□□□□ -2.08
TRM3YDL112W ZDS2P54786 942 aa2.08□□□□□ -2.08
TRM3YDL112W ROT1Q03691 256 aa2.08□□□□□ -2.08
TRM3YDL112W CRR1Q05790 422 aa2.08□□□□□ -2.08
TRM3YDL112W TMA46Q12000 345 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W CMP2P14747 604 aa2.08□□□□□ -2.08
TRM3YDL112W RFA1P22336 621 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W CDC60P26637 1090 aaKnown RBP2.08□□□□□ -2.08
TRM3YDL112W PBP2P38151 413 aaKnown RBP RIP-Chip data2.08□□□□□ -2.08not detected
TRM3YDL112W CNN1P43618 361 aa2.08□□□□□ -2.08
TRM3YDL112W PKH1Q03407 766 aa2.08□□□□□ -2.08
TRM3YDL112W HEM13P11353 328 aaKnown RBP2.07□□□□□ -2.08
TRM3YDL112W HSP60P19882 572 aaKnown RBP2.07□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 104.8 ms