RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YJL045WP47052 634 aa1.47□□□□□ -2.17
CDC39YCR093W SLD3P53135 668 aa1.47□□□□□ -2.17
CDC39YCR093W YMR018WQ04364 514 aa1.47□□□□□ -2.17
CDC39YCR093W PFK2P16862 959 aaKnown RBP RIP-Chip data1.47□□□□□ -2.17not detected
CDC39YCR093W HCA4P20448 770 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W JNM1P36224 373 aa1.47□□□□□ -2.17
CDC39YCR093W TYS1P36421 394 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W GUS1P46655 708 aaKnown RBP RIP-Chip data1.47□□□□□ -2.17not detected
CDC39YCR093W YGR153WP48238 217 aa1.47□□□□□ -2.17
CDC39YCR093W AMA1P50082 593 aa1.47□□□□□ -2.17
CDC39YCR093W THI73Q07904 523 aa1.47□□□□□ -2.17
CDC39YCR093W MET3P08536 511 aa1.47□□□□□ -2.17
CDC39YCR093W CAD1P24813 409 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W DUG1P43616 481 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W RAI1P53063 387 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W YGR012WP53206 393 aa1.47□□□□□ -2.17
CDC39YCR093W TIF35Q04067 274 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W RSC58Q07979 502 aa1.47□□□□□ -2.17
CDC39YCR093W GPB1Q08886 897 aa1.47□□□□□ -2.17
CDC39YCR093W SPT6P23615 1451 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W GPM1P00950 247 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W NOT3P06102 836 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W MSC7P38694 644 aa1.46□□□□□ -2.18
CDC39YCR093W YGR237CP50089 785 aa1.46□□□□□ -2.18
CDC39YCR093W CRR1Q05790 422 aa1.46□□□□□ -2.18
CDC39YCR093W HOS1Q12214 470 aa1.46□□□□□ -2.18
CDC39YCR093W CYC7P00045 113 aa1.46□□□□□ -2.18
CDC39YCR093W CDC12P32468 407 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W HOG1P32485 435 aa1.46□□□□□ -2.18
CDC39YCR093W SLA2P33338 968 aa1.46□□□□□ -2.18
CDC39YCR093W SPC29P33419 253 aa1.46□□□□□ -2.18
CDC39YCR093W YPL034WQ03083 165 aa1.46□□□□□ -2.18
CDC39YCR093W ARA2Q04212 335 aa1.46□□□□□ -2.18
CDC39YCR093W GAD1Q04792 585 aa1.46□□□□□ -2.18
CDC39YCR093W GUD1Q07729 489 aa1.46□□□□□ -2.18
CDC39YCR093W SWM1Q12379 170 aa1.46□□□□□ -2.18
CDC39YCR093W ESP1Q03018 1630 aa1.46□□□□□ -2.18
CDC39YCR093W TY1B-JR2P47100 1755 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W TY1B-ER2Q03619 1755 aa1.46□□□□□ -2.18
CDC39YCR093W TY1B-MR1Q04214 1755 aa1.46□□□□□ -2.18
CDC39YCR093W TY1B-MR2Q04670 1755 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W TY1B-LR1Q12088 1755 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W TY1B-NL1Q12112 1755 aa1.46□□□□□ -2.18
CDC39YCR093W TY1B-GR1Q12141 1755 aa1.46□□□□□ -2.18
CDC39YCR093W TY1B-BLQ12490 1755 aa1.46□□□□□ -2.18
CDC39YCR093W ATP4P05626 244 aa1.46□□□□□ -2.18
CDC39YCR093W LNP1P38878 278 aa1.46□□□□□ -2.18
CDC39YCR093W RET2P43621 546 aa1.46□□□□□ -2.18
CDC39YCR093W SSY1Q03770 852 aa1.46□□□□□ -2.18
CDC39YCR093W MAG2Q06436 670 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W MSH2P25847 964 aa1.46□□□□□ -2.18
CDC39YCR093W PCM1P38628 557 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W ECM1P39715 212 aa1.46□□□□□ -2.18
CDC39YCR093W PIC2P40035 300 aa1.46□□□□□ -2.18
CDC39YCR093W SKP2P42843 763 aa1.46□□□□□ -2.18
CDC39YCR093W ALT1P52893 592 aa1.46□□□□□ -2.18
CDC39YCR093W NCE103P53615 221 aa1.46□□□□□ -2.18
CDC39YCR093W REC102Q02721 264 aa1.46□□□□□ -2.18
CDC39YCR093W RAT1Q02792 1006 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W MDM38Q08179 573 aa1.46□□□□□ -2.18
CDC39YCR093W TY1A-NL1Q12391 440 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W DGR2P32330 852 aa1.46□□□□□ -2.18
CDC39YCR093W RPT3P33298 428 aaKnown RBP1.46□□□□□ -2.18
CDC39YCR093W NUP120P35729 1037 aa1.46□□□□□ -2.18
CDC39YCR093W PET10P36139 283 aa1.46□□□□□ -2.18
CDC39YCR093W GPB2P39717 880 aa1.46□□□□□ -2.18
CDC39YCR093W PEX15Q08215 383 aa1.46□□□□□ -2.18
CDC39YCR093W GUP2Q08929 609 aa1.46□□□□□ -2.18
CDC39YCR093W NBP2Q12163 236 aa1.46□□□□□ -2.18
CDC39YCR093W GCD7P32502 381 aaPredicted RBP1.45□□□□□ -2.18
CDC39YCR093W AMN1P38285 549 aaPredicted RBP1.45□□□□□ -2.18
CDC39YCR093W SET5P38890 526 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W NAM8Q00539 523 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W EEB1Q02891 456 aa1.45□□□□□ -2.18
CDC39YCR093W TFB2Q02939 513 aa1.45□□□□□ -2.18
CDC39YCR093W GFD1Q04839 188 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W DOP1Q03921 1698 aa1.45□□□□□ -2.18
CDC39YCR093W PER1P25625 357 aa1.45□□□□□ -2.18
CDC39YCR093W PRP19P32523 503 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W PUB1P32588 453 aaKnown RBP RIP-Chip data1.45□□□□□ -2.18not detected
CDC39YCR093W MRS6P32864 603 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W EMC3P36039 253 aa1.45□□□□□ -2.18
CDC39YCR093W YKL133CP36066 463 aa1.45□□□□□ -2.18
CDC39YCR093W ECM21P38167 1117 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W YEL025CP39991 1188 aa1.45□□□□□ -2.18
CDC39YCR093W RLP7P40693 322 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W RTS3P53289 263 aa1.45□□□□□ -2.18
CDC39YCR093W YAP1802P53309 568 aa1.45□□□□□ -2.18
CDC39YCR093W SNP1Q00916 300 aaPredicted RBP1.45□□□□□ -2.18
CDC39YCR093W FMP25Q08023 583 aa1.45□□□□□ -2.18
CDC39YCR093W DUN1P39009 513 aa1.45□□□□□ -2.18
CDC39YCR093W KAP123P40069 1113 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W MNN11P46985 422 aaKnown RBP1.45□□□□□ -2.18
CDC39YCR093W BUD9P53226 547 aa1.45□□□□□ -2.18
CDC39YCR093W ORC3P54790 616 aa1.45□□□□□ -2.18
CDC39YCR093W CTR9P89105 1077 aa1.45□□□□□ -2.18
CDC39YCR093W PUF3Q07807 879 aaKnown RBP RIP-Chip data1.45□□□□□ -2.18 RIP-Chip
CDC39YCR093W AIM39Q08223 395 aa1.45□□□□□ -2.18
CDC39YCR093W GIN4Q12263 1142 aa1.45□□□□□ -2.18
CDC39YCR093W GLT1Q12680 2145 aaKnown RBP1.45□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 79.8 ms