RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	RPL22A	P05749	121 aa	Known RBP	4.38	□□□□□ -1.71
PTA1	YAL043C	RPB2	P08518	1224 aa	Known RBP	4.38	□□□□□ -1.71
PTA1	YAL043C	MCM1	P11746	286 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	RGR1	P19263	1082 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	CKI1	P20485	582 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	SRM1	P21827	482 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	PWP2	P25635	923 aa	Known RBP	4.38	□□□□□ -1.71
PTA1	YAL043C	NAM7	P30771	971 aa	Known RBP	4.38	□□□□□ -1.71
PTA1	YAL043C	CNS1	P33313	385 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	HEL1	P36113	551 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	STV1	P37296	890 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	YBL028C	P38202	106 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	GAA1	P39012	614 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	MAL13	P53338	473 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	CPR6	P53691	371 aa	Known RBP	4.38	□□□□□ -1.71
PTA1	YAL043C	YPR078C	Q06813	372 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	MLH2	Q07980	695 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	SLX4	Q12098	748 aa		4.38	□□□□□ -1.71
PTA1	YAL043C	FAS2	P19097	1887 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	POL3	P15436	1097 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	PRP16	P15938	1071 aa	Predicted RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	PRP4	P20053	465 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	PRE8	P23639	250 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	CDC48	P25694	835 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	NUD1	P32336	851 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	GCD6	P32501	712 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	GYP6	P32806	458 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	LOS1	P33418	1100 aa	Predicted RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	NPL4	P33755	580 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	YBR062C	P38239	180 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	SPP381	P38282	291 aa	Predicted RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	AIM21	P40563	679 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	RET3	P53600	189 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	RIP-Chip
PTA1	YAL043C	USA1	Q03714	838 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	VTI1	Q04338	217 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	VIP1	Q06685	1146 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	NUR1	Q12066	484 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	RIB2	Q12362	591 aa	Known RBP	4.37	□□□□□ -1.71
PTA1	YAL043C	YDR461C-A	Q2V2P7	80 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	FLO1	P32768	1537 aa		4.37	□□□□□ -1.71
PTA1	YAL043C	PRP9	P19736	530 aa	Known RBP	4.36	□□□□□ -1.71
PTA1	YAL043C	YTA12	P40341	825 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	YJR142W	P47173	342 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	KAP114	P53067	1004 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	STE23	Q06010	1027 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	DIB1	Q06819	143 aa	Predicted RBP	4.36	□□□□□ -1.71
PTA1	YAL043C	CHS2	P14180	963 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	OAF3	P36023	863 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	ECM2	P38241	364 aa	Known RBP	4.36	□□□□□ -1.71
PTA1	YAL043C	TOS1	P38288	455 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	BRE2	P43132	505 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	URB2	P47108	1174 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	EAF6	P47128	113 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	FMS1	P50264	508 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	MSN5	P52918	1224 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	HUL5	P53119	910 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	JJJ1	P53863	590 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	PIG1	Q06216	648 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	NEW1	Q08972	1196 aa	Known RBP	4.36	□□□□□ -1.71
PTA1	YAL043C	AIM41	Q12032	185 aa		4.36	□□□□□ -1.71
PTA1	YAL043C	TUB2	P02557	457 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	UBP1	P25037	809 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	CDC11	P32458	415 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	SWH1	P35845	1188 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	PGM2	P37012	569 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	GEF1	P37020	779 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	EXO5	P38289	585 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	CBR1	P38626	284 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	TOM71	P38825	639 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	CCT3	P39077	534 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	RIM8	P53179	542 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	UTP22	P53254	1237 aa	Predicted RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	YML020W	Q03722	664 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	TAF9	Q05027	157 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	NOP6	Q07623	225 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	TRP2	P00899	507 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	YMR085W	P0CF18	432 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	ADP1	P25371	1049 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	HIS2	P38635	335 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	STN1	P38960	494 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	RPN3	P40016	523 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	MRX1	P40050	688 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	LCP5	P40079	357 aa	Predicted RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	MAD1	P40957	749 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	ISM1	P48526	1002 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	ZIP2	P53061	704 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	ADA2	Q02336	434 aa		4.35	□□□□□ -1.71
PTA1	YAL043C	BUD20	Q08004	166 aa	Predicted RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	YOR059C	Q08448	450 aa	Known RBP	4.35	□□□□□ -1.71
PTA1	YAL043C	PRT1	P06103	763 aa	Known RBP	4.34	□□□□□ -1.71
PTA1	YAL043C	SWI6	P09959	803 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	SAM1	P10659	382 aa	Known RBP	4.34	□□□□□ -1.71
PTA1	YAL043C	VAN1	P23642	535 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	SEC20	P28791	383 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	MRF1	P30775	413 aa	Predicted RBP	4.34	□□□□□ -1.71
PTA1	YAL043C	VPS35	P34110	944 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	SHP1	P34223	423 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	RRN3	P36070	627 aa		4.34	□□□□□ -1.71
PTA1	YAL043C	YKR018C	P36114	725 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms