RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	FAR11	P53917	953 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	RNT1	Q02555	471 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	GIS4	Q04233	774 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	HRQ1	Q05549	1077 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	CTI6	Q08923	506 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	TMA46	Q12000	345 aa	Known RBP	4.97	□□□□□ -1.61
CDC42	YLR229C	SFI1	Q12369	946 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	POM152	P39685	1337 aa		4.97	□□□□□ -1.61
CDC42	YLR229C	UTP10	P42945	1769 aa	Known RBP	4.96	□□□□□ -1.61
CDC42	YLR229C	HTS1	P07263	546 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	RPL19A	P0CX82	189 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	RPL19B	P0CX83	189 aa	Predicted RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	NAR1	P23503	491 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	MPE1	P35728	441 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	TED1	P40533	473 aa		4.96	□□□□□ -1.62
CDC42	YLR229C	CIR1	P42940	261 aa		4.96	□□□□□ -1.62
CDC42	YLR229C	LYS4	P49367	693 aa	Predicted RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	YGL081W	P53156	320 aa		4.96	□□□□□ -1.62
CDC42	YLR229C	ALD6	P54115	500 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	NOG1	Q02892	647 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	VPS16	Q03308	798 aa		4.96	□□□□□ -1.62
CDC42	YLR229C	HAS1	Q03532	505 aa	Known RBP	4.96	□□□□□ -1.62
CDC42	YLR229C	YIG1	Q08956	461 aa		4.96	□□□□□ -1.62
CDC42	YLR229C	AI1	P03875	834 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	VMA4	P22203	233 aa	Known RBP	4.95	□□□□□ -1.62
CDC42	YLR229C	PAN5	P38787	379 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	CIN4	P39110	191 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	NUG1	P40010	520 aa	Known RBP	4.95	□□□□□ -1.62
CDC42	YLR229C	CEP3	P40969	608 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	NNF1	P47149	201 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	GCV1	P48015	400 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	DSE4	P53753	1117 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	ARP5	P53946	755 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	SYF1	Q04048	859 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC42	YLR229C	RTT10	Q08924	1013 aa		4.95	□□□□□ -1.62
CDC42	YLR229C	NOP14	Q99207	810 aa	Known RBP	4.95	□□□□□ -1.62
CDC42	YLR229C	DUR1,2	P32528	1835 aa	Known RBP	4.95	□□□□□ -1.62
CDC42	YLR229C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
CDC42	YLR229C	HVG1	P0CE11	249 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	MGM1	P32266	881 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	SPC110	P32380	944 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	MAE1	P36013	669 aa	Known RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	AMN1	P38285	549 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	ICP55	P40051	511 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	YMR147W	P40218	223 aa	Known RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	ENP2	P48234	707 aa	Known RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	CTF18	P49956	741 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	GDE1	Q02979	1223 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	BDF2	Q07442	638 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	THI3	Q07471	609 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	PSK2	Q08217	1101 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	LAP2	Q10740	671 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	SSF2	Q12153	453 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	TAH18	Q12181	623 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	PGA3	Q12746	312 aa	Known RBP	4.94	□□□□□ -1.62
CDC42	YLR229C	LAM4	P38800	1345 aa		4.94	□□□□□ -1.62
CDC42	YLR229C	CDC34	P14682	295 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	PEP3	P27801	918 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	TRK2	P28584	889 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	PRX1	P34227	261 aa	Known RBP	4.93	□□□□□ -1.62
CDC42	YLR229C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC42	YLR229C	TOS1	P38288	455 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	REI1	P38344	393 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC42	YLR229C	HSE1	P38753	452 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	PIC2	P40035	300 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	RAD26	P40352	1085 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	CCT5	P40413	562 aa	Known RBP	4.93	□□□□□ -1.62
CDC42	YLR229C	VID28	P40547	921 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	CTH1	P47976	325 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	YGL140C	P53120	1219 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	PEX19	Q07418	342 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	RIX7	Q07844	837 aa	Known RBP	4.93	□□□□□ -1.62
CDC42	YLR229C	AVO1	Q08236	1176 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	ELG1	Q12050	791 aa		4.93	□□□□□ -1.62
CDC42	YLR229C	DED1	P06634	604 aa	Known RBP	4.92	□□□□□ -1.62
CDC42	YLR229C	SEC23	P15303	768 aa	Known RBP	4.92	□□□□□ -1.62
CDC42	YLR229C	CLB1	P24868	471 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	MRC1	P25588	1096 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	DEP1	P31385	405 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	IMP2'	P32351	346 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	ELM1	P32801	640 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	YHL017W	P38745	532 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	IRC8	P47046	822 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	YKE2	P52553	114 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	INM2	Q05533	292 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	IRC3	Q06683	689 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	YPL150W	Q12152	901 aa		4.92	□□□□□ -1.62
CDC42	YLR229C	CYB2	P00175	591 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	CPA2	P03965	1118 aa	Known RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	GCR1	P07261	785 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	PET111	P08468	800 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	MATALPHA2	P0CY08	210 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	HMLALPHA2	P0CY09	210 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	FRD1	P32614	470 aa	Known RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	ADD66	P36040	267 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	GRX7	P38068	203 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	EXO5	P38289	585 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	RRM3	P38766	723 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	CRG1	P38892	291 aa	RIP-Chip data	4.91	□□□□□ -1.62	not detected
CDC42	YLR229C	YIR042C	P40586	236 aa		4.91	□□□□□ -1.62

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