RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W BOP3P53958 396 aa12.25□□□□□ -0.45
SIM1YIL123W CRD1Q07560 283 aa12.25□□□□□ -0.45
SIM1YIL123W FAL1Q12099 399 aaKnown RBP12.25□□□□□ -0.45
SIM1YIL123W VMA2P16140 517 aaKnown RBP12.24□□□□□ -0.45
SIM1YIL123W KTR2P33550 425 aa12.24□□□□□ -0.45
SIM1YIL123W UBP13P38187 747 aa12.24□□□□□ -0.45
SIM1YIL123W NCS2P53923 493 aaPredicted RBP12.24□□□□□ -0.45
SIM1YIL123W YAF9P53930 226 aa12.24□□□□□ -0.45
SIM1YIL123W VAC14Q06708 880 aa12.24□□□□□ -0.45
SIM1YIL123W OPY2Q06810 360 aa12.24□□□□□ -0.45
SIM1YIL123W TYW1Q08960 810 aaKnown RBP12.24□□□□□ -0.45
SIM1YIL123W PHO8P11491 566 aa12.23□□□□□ -0.45
SIM1YIL123W TUP1P16649 713 aa12.23□□□□□ -0.45
SIM1YIL123W RAD57P25301 460 aa12.23□□□□□ -0.45
SIM1YIL123W DPB3P27344 201 aa12.23□□□□□ -0.45
SIM1YIL123W YEL1P34225 687 aa12.23□□□□□ -0.45
SIM1YIL123W MCD4P36051 919 aa12.23□□□□□ -0.45
SIM1YIL123W FIG4P42837 879 aa12.23□□□□□ -0.45
SIM1YIL123W SMC3P47037 1230 aa12.23□□□□□ -0.45
SIM1YIL123W HUL5P53119 910 aa12.23□□□□□ -0.45
SIM1YIL123W YGL039WP53183 348 aaKnown RBP12.23□□□□□ -0.45
SIM1YIL123W GIR2Q03768 265 aaPredicted RBP12.23□□□□□ -0.45
SIM1YIL123W CDC19P00549 500 aaKnown RBP12.22□□□□□ -0.45
SIM1YIL123W SCP160P06105 1222 aaKnown RBP RIP-Chip data12.22□□□□□ -0.45 RIP-Chip
SIM1YIL123W TOM70P07213 617 aaKnown RBP12.22□□□□□ -0.45
SIM1YIL123W YEL043WP32618 956 aa12.22□□□□□ -0.45
SIM1YIL123W SDS3P40505 327 aa12.22□□□□□ -0.45
SIM1YIL123W YGR125WP53273 1036 aa12.22□□□□□ -0.45
SIM1YIL123W MAL13P53338 473 aa12.22□□□□□ -0.45
SIM1YIL123W YPR078CQ06813 372 aa12.22□□□□□ -0.45
SIM1YIL123W HXT1P32465 570 aa12.21□□□□□ -0.45
SIM1YIL123W SRB4P32569 687 aa12.21□□□□□ -0.45
SIM1YIL123W YSC83P32792 385 aa12.21□□□□□ -0.45
SIM1YIL123W YIL089WP40500 205 aa12.21□□□□□ -0.45
SIM1YIL123W CFT2Q12102 859 aaPredicted RBP12.21□□□□□ -0.45
SIM1YIL123W DBP5P20449 482 aaKnown RBP12.2□□□□□ -0.46
SIM1YIL123W TKL1P23254 680 aaKnown RBP12.2□□□□□ -0.46
SIM1YIL123W XRS2P33301 854 aa12.2□□□□□ -0.46
SIM1YIL123W CAB3P36076 571 aa12.2□□□□□ -0.46
SIM1YIL123W BUD16P39988 312 aa12.2□□□□□ -0.46
SIM1YIL123W HMF1P40037 129 aaKnown RBP12.2□□□□□ -0.46
SIM1YIL123W COS5P47187 383 aa12.2□□□□□ -0.46
SIM1YIL123W YLR297WQ05899 129 aa12.2□□□□□ -0.46
SIM1YIL123W RLP24Q07915 199 aaKnown RBP12.2□□□□□ -0.46
SIM1YIL123W DAS2Q12084 232 aa12.2□□□□□ -0.46
SIM1YIL123W ERP3Q12403 225 aa12.2□□□□□ -0.46
SIM1YIL123W CKI1P20485 582 aa12.2□□□□□ -0.46
SIM1YIL123W PKC1P24583 1151 aa12.2□□□□□ -0.46
SIM1YIL123W SMC1P32908 1225 aa12.2□□□□□ -0.46
SIM1YIL123W RRP1P35178 278 aaPredicted RBP12.2□□□□□ -0.46
SIM1YIL123W PCS60P38137 543 aaKnown RBP RIP-Chip data12.2□□□□□ -0.46not detected
SIM1YIL123W REI1P38344 393 aaPredicted RBP12.2□□□□□ -0.46
SIM1YIL123W LCB2P40970 561 aa12.2□□□□□ -0.46
SIM1YIL123W TAD1P53065 400 aa12.2□□□□□ -0.46
SIM1YIL123W NGL3Q03210 505 aa12.2□□□□□ -0.46
SIM1YIL123W NOP14Q99207 810 aaKnown RBP12.2□□□□□ -0.46
SIM1YIL123W SWI6P09959 803 aa12.19□□□□□ -0.46
SIM1YIL123W EUG1P32474 517 aa12.19□□□□□ -0.46
SIM1YIL123W SEC8P32855 1065 aa12.19□□□□□ -0.46
SIM1YIL123W NIP100P33420 868 aa12.19□□□□□ -0.46
SIM1YIL123W VPS29P38759 282 aa12.19□□□□□ -0.46
SIM1YIL123W PRP31P49704 494 aaPredicted RBP12.19□□□□□ -0.46
SIM1YIL123W UBP15P50101 1230 aa12.19□□□□□ -0.46
SIM1YIL123W LTV1P34078 463 aa12.18□□□□□ -0.46
SIM1YIL123W ATG19P35193 415 aa12.18□□□□□ -0.46
SIM1YIL123W TVP38P36164 337 aa12.18□□□□□ -0.46
SIM1YIL123W REG2P38232 338 aa12.18□□□□□ -0.46
SIM1YIL123W RBA50Q04418 439 aa12.18□□□□□ -0.46
SIM1YIL123W SOV1Q04748 898 aa12.18□□□□□ -0.46
SIM1YIL123W VPS35P34110 944 aa12.17□□□□□ -0.46
SIM1YIL123W PEX21P50091 288 aa12.17□□□□□ -0.46
SIM1YIL123W SVF1Q05515 481 aa12.17□□□□□ -0.46
SIM1YIL123W DON1Q05610 365 aa12.17□□□□□ -0.46
SIM1YIL123W MLH2Q07980 695 aa12.17□□□□□ -0.46
SIM1YIL123W CHS2P14180 963 aa12.16□□□□□ -0.46
SIM1YIL123W CDC48P25694 835 aaKnown RBP12.16□□□□□ -0.46
SIM1YIL123W NAM7P30771 971 aaKnown RBP12.16□□□□□ -0.46
SIM1YIL123W COT1P32798 439 aa12.16□□□□□ -0.46
SIM1YIL123W HXT8P40886 569 aa12.16□□□□□ -0.46
SIM1YIL123W MMM1P41800 426 aa12.16□□□□□ -0.46
SIM1YIL123W TAM41P53230 385 aa12.16□□□□□ -0.46
SIM1YIL123W ROD1Q02805 837 aa12.16□□□□□ -0.46
SIM1YIL123W CSR1Q06705 408 aaKnown RBP12.16□□□□□ -0.46
SIM1YIL123W TSR1Q07381 788 aaKnown RBP12.16□□□□□ -0.46
SIM1YIL123W SMC5Q08204 1093 aa12.16□□□□□ -0.46
SIM1YIL123W YKL023WP36103 277 aaKnown RBP12.15□□□□□ -0.46
SIM1YIL123W BYE1P36106 594 aa12.15□□□□□ -0.46
SIM1YIL123W DBP7P36120 742 aaKnown RBP12.15□□□□□ -0.46
SIM1YIL123W JNM1P36224 373 aa12.15□□□□□ -0.46
SIM1YIL123W SET5P38890 526 aaKnown RBP12.15□□□□□ -0.46
SIM1YIL123W SMF1P38925 575 aa12.15□□□□□ -0.46
SIM1YIL123W ESBP6P53918 673 aa12.15□□□□□ -0.46
SIM1YIL123W TIM8P57744 87 aa12.15□□□□□ -0.46
SIM1YIL123W SLD5Q03406 294 aa12.15□□□□□ -0.46
SIM1YIL123W YLR001CQ07895 862 aa12.15□□□□□ -0.46
SIM1YIL123W ERC1P38767 581 aa12.14□□□□□ -0.47
SIM1YIL123W YMR124WP39523 943 aaKnown RBP12.14□□□□□ -0.47
SIM1YIL123W VPS53P47061 822 aa12.14□□□□□ -0.47
SIM1YIL123W BTN2P53286 410 aa12.14□□□□□ -0.47
SIM1YIL123W RRB1Q04225 511 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms