RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C GCD6P32501 712 aaKnown RBP4.39□□□□□ -1.71
CDC40YDR364C SRP40P32583 406 aaPredicted RBP4.39□□□□□ -1.71
CDC40YDR364C PPG1P32838 368 aa4.39□□□□□ -1.71
CDC40YDR364C ALG3P38179 458 aa4.39□□□□□ -1.71
CDC40YDR364C NMD2P38798 1089 aaKnown RBP4.39□□□□□ -1.71
CDC40YDR364C VAC8P39968 578 aa4.39□□□□□ -1.71
CDC40YDR364C MAD1P40957 749 aa4.39□□□□□ -1.71
CDC40YDR364C RNH70P53331 553 aa4.39□□□□□ -1.71
CDC40YDR364C YPL109CQ02981 657 aa4.39□□□□□ -1.71
CDC40YDR364C DOP1Q03921 1698 aa4.38□□□□□ -1.71
CDC40YDR364C MET4P32389 672 aa4.38□□□□□ -1.71
CDC40YDR364C DEF1P35732 738 aaKnown RBP4.38□□□□□ -1.71
CDC40YDR364C DAK2P43550 591 aa4.38□□□□□ -1.71
CDC40YDR364C YJR107WP47145 328 aa4.38□□□□□ -1.71
CDC40YDR364C YLR224WQ05947 369 aa4.38□□□□□ -1.71
CDC40YDR364C RIB2Q12362 591 aaKnown RBP4.38□□□□□ -1.71
CDC40YDR364C KIN2P13186 1147 aaKnown RBP4.36□□□□□ -1.71
CDC40YDR364C PEP7P32609 515 aa4.36□□□□□ -1.71
CDC40YDR364C ALD6P54115 500 aaKnown RBP4.36□□□□□ -1.71
CDC40YDR364C SIZ1Q04195 904 aa4.36□□□□□ -1.71
CDC40YDR364C TOS4Q06266 489 aa4.36□□□□□ -1.71
CDC40YDR364C VTS1Q08831 523 aaKnown RBP RIP-Chip data4.36□□□□□ -1.71not detected
CDC40YDR364C CHC1P22137 1653 aaKnown RBP4.36□□□□□ -1.71
CDC40YDR364C DNF2Q12675 1612 aa4.35□□□□□ -1.71
CDC40YDR364C TAF13P11747 167 aa4.35□□□□□ -1.71
CDC40YDR364C RPT1P33299 467 aaKnown RBP4.35□□□□□ -1.71
CDC40YDR364C YKL091CP33324 310 aaKnown RBP4.35□□□□□ -1.71
CDC40YDR364C FYV10P40492 516 aa4.35□□□□□ -1.71
CDC40YDR364C KIN4Q01919 800 aa4.35□□□□□ -1.71
CDC40YDR364C YAP6Q03935 383 aa4.35□□□□□ -1.71
CDC40YDR364C HMI1Q12039 706 aa4.35□□□□□ -1.71
CDC40YDR364C TOP1P04786 769 aa4.34□□□□□ -1.71
CDC40YDR364C MCM2P29469 868 aa4.34□□□□□ -1.71
CDC40YDR364C RRP14P36080 434 aaKnown RBP4.34□□□□□ -1.71
CDC40YDR364C MSS4P38994 779 aa4.34□□□□□ -1.71
CDC40YDR364C OSW7P43611 510 aa4.34□□□□□ -1.71
CDC40YDR364C ATG13Q06628 738 aa4.34□□□□□ -1.71
CDC40YDR364C OXR1Q08952 273 aa4.34□□□□□ -1.71
CDC40YDR364C WRS1Q12109 432 aaKnown RBP4.34□□□□□ -1.71
CDC40YDR364C SVS1Q12254 260 aa4.34□□□□□ -1.71
CDC40YDR364C PDR5P33302 1511 aaKnown RBP4.33□□□□□ -1.72
CDC40YDR364C APL1P27351 700 aa4.33□□□□□ -1.72
CDC40YDR364C PAF1P38351 445 aa4.33□□□□□ -1.72
CDC40YDR364C PIC2P40035 300 aa4.33□□□□□ -1.72
CDC40YDR364C SPR28Q04921 423 aa4.33□□□□□ -1.72
CDC40YDR364C NOP12Q08208 459 aaKnown RBP4.33□□□□□ -1.72
CDC40YDR364C YOR093CQ12275 1648 aa4.33□□□□□ -1.72
CDC40YDR364C GCN2P15442 1659 aa4.33□□□□□ -1.72
CDC40YDR364C IML1P47170 1584 aa4.32□□□□□ -1.72
CDC40YDR364C EMC1P25574 760 aa4.32□□□□□ -1.72
CDC40YDR364C YFL054CP43549 646 aa4.32□□□□□ -1.72
CDC40YDR364C YJR008WP47085 338 aa4.32□□□□□ -1.72
CDC40YDR364C CWC24P53769 259 aa4.32□□□□□ -1.72
CDC40YDR364C MAP1Q01662 387 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
CDC40YDR364C CLN2P20438 545 aa4.31□□□□□ -1.72
CDC40YDR364C SIP5P40210 489 aaKnown RBP4.31□□□□□ -1.72
CDC40YDR364C GTF1P53260 183 aaPredicted RBP4.31□□□□□ -1.72
CDC40YDR364C RTS3P53289 263 aa4.31□□□□□ -1.72
CDC40YDR364C MSC2Q03455 724 aa4.31□□□□□ -1.72
CDC40YDR364C PPM2Q08282 695 aa4.31□□□□□ -1.72
CDC40YDR364C VMR1P38735 1592 aa4.31□□□□□ -1.72
CDC40YDR364C DED1P06634 604 aaKnown RBP4.3□□□□□ -1.72
CDC40YDR364C TSR4P25040 408 aa4.3□□□□□ -1.72
CDC40YDR364C OAR1P35731 278 aa4.3□□□□□ -1.72
CDC40YDR364C PLB1P39105 664 aa4.3□□□□□ -1.72
CDC40YDR364C RPS26AP39938 119 aaKnown RBP4.3□□□□□ -1.72
CDC40YDR364C RPS26BP39939 119 aaKnown RBP4.3□□□□□ -1.72
CDC40YDR364C GCV2P49095 1034 aa4.3□□□□□ -1.72
CDC40YDR364C VPS16Q03308 798 aa4.3□□□□□ -1.72
CDC40YDR364C PIN2Q12057 282 aa4.3□□□□□ -1.72
CDC40YDR364C RAV1P47104 1357 aa4.3□□□□□ -1.72
CDC40YDR364C HXK1P04806 485 aaKnown RBP4.29□□□□□ -1.72
CDC40YDR364C CIT2P08679 460 aa4.29□□□□□ -1.72
CDC40YDR364C RGD1P38339 666 aa4.29□□□□□ -1.72
CDC40YDR364C FPR3P38911 411 aaKnown RBP4.29□□□□□ -1.72
CDC40YDR364C IOC3P43596 787 aa4.29□□□□□ -1.72
CDC40YDR364C ENT3P47160 408 aa4.29□□□□□ -1.72
CDC40YDR364C RAT1Q02792 1006 aaKnown RBP4.29□□□□□ -1.72
CDC40YDR364C CDC53Q12018 815 aaKnown RBP4.29□□□□□ -1.72
CDC40YDR364C YOR131CQ12486 218 aa4.29□□□□□ -1.72
CDC40YDR364C ALG12P53730 551 aa4.28□□□□□ -1.72
CDC40YDR364C PDR11P40550 1411 aa4.28□□□□□ -1.72
CDC40YDR364C NUP188P52593 1655 aaKnown RBP4.28□□□□□ -1.72
CDC40YDR364C YER152CP10356 443 aa4.27□□□□□ -1.73
CDC40YDR364C MKK2P32491 506 aa4.27□□□□□ -1.73
CDC40YDR364C PET112P33893 541 aa4.27□□□□□ -1.73
CDC40YDR364C MOH1P38191 138 aa4.27□□□□□ -1.73
CDC40YDR364C FAA3P39002 694 aa4.27□□□□□ -1.73
CDC40YDR364C NUG1P40010 520 aaKnown RBP4.27□□□□□ -1.73
CDC40YDR364C ROD1Q02805 837 aa4.27□□□□□ -1.73
CDC40YDR364C RMD1Q03441 430 aa4.27□□□□□ -1.73
CDC40YDR364C NSE3Q05541 303 aa4.27□□□□□ -1.73
CDC40YDR364C YAP3P38749 330 aa4.27□□□□□ -1.73
CDC40YDR364C MET12P46151 657 aa4.27□□□□□ -1.73
CDC40YDR364C YJL049WP47048 450 aa4.27□□□□□ -1.73
CDC40YDR364C SIW14P53965 281 aa4.27□□□□□ -1.73
CDC40YDR364C ESF1Q06344 628 aaKnown RBP4.27□□□□□ -1.73
CDC40YDR364C SSF2Q12153 453 aaPredicted RBP4.27□□□□□ -1.73
CDC40YDR364C RTC1Q08281 1341 aa4.27□□□□□ -1.73
CDC40YDR364C STI1P15705 589 aaKnown RBP RIP-Chip data4.26□□□□□ -1.73not detected
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms