RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W FAP7Q12055 197 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W MRC1P25588 1096 aa1.49□□□□□ -2.17
CDC39YCR093W PBP2P38151 413 aaKnown RBP RIP-Chip data1.49□□□□□ -2.17not detected
CDC39YCR093W TDA3P38758 523 aa1.49□□□□□ -2.17
CDC39YCR093W FAA3P39002 694 aa1.49□□□□□ -2.17
CDC39YCR093W POL5P39985 1022 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W MTR3P48240 250 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W NPY1P53164 384 aa1.49□□□□□ -2.17
CDC39YCR093W YNR040WP53736 256 aa1.49□□□□□ -2.17
CDC39YCR093W RRP15Q06511 250 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W TY2B-BQ12491 1770 aa1.49□□□□□ -2.17
CDC39YCR093W ATE1P16639 503 aa1.49□□□□□ -2.17
CDC39YCR093W CDC43P18898 376 aa1.49□□□□□ -2.17
CDC39YCR093W AIM26P32858 118 aa1.49□□□□□ -2.17
CDC39YCR093W VBA5P36172 582 aa1.49□□□□□ -2.17
CDC39YCR093W RSP5P39940 809 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W GTS1P40956 396 aa1.49□□□□□ -2.17
CDC39YCR093W PPN1Q04119 674 aa1.49□□□□□ -2.17
CDC39YCR093W AI3P03877 415 aa1.49□□□□□ -2.17
CDC39YCR093W MDJ1P35191 511 aa1.49□□□□□ -2.17
CDC39YCR093W RRP8P38961 392 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W SAW1P39735 261 aa1.49□□□□□ -2.17
CDC39YCR093W PZF1P39933 429 aa1.49□□□□□ -2.17
CDC39YCR093W SBE2P42223 864 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W SLS1P42900 643 aa1.49□□□□□ -2.17
CDC39YCR093W YFL052WP43551 465 aa1.49□□□□□ -2.17
CDC39YCR093W TIM44Q01852 431 aa1.49□□□□□ -2.17
CDC39YCR093W RPL11AP0C0W9 174 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W KIP1P28742 1111 aa1.49□□□□□ -2.17
CDC39YCR093W ABD1P32783 436 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W TAF5P38129 798 aa1.49□□□□□ -2.17
CDC39YCR093W RNH70P53331 553 aa1.49□□□□□ -2.17
CDC39YCR093W NPL3Q01560 414 aaKnown RBP RIP-Chip data1.49□□□□□ -2.17not detected
CDC39YCR093W PKH1Q03407 766 aa1.49□□□□□ -2.17
CDC39YCR093W UTP5Q04177 643 aaKnown RBP1.49□□□□□ -2.17
CDC39YCR093W RPL11BQ3E757 174 aaPredicted RBP1.49□□□□□ -2.17
CDC39YCR093W PRC1P00729 532 aa1.48□□□□□ -2.17
CDC39YCR093W SED4P25365 1065 aa1.48□□□□□ -2.17
CDC39YCR093W CDC15P27636 974 aa1.48□□□□□ -2.17
CDC39YCR093W NAM7P30771 971 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W MKK2P32491 506 aa1.48□□□□□ -2.17
CDC39YCR093W ALG12P53730 551 aa1.48□□□□□ -2.17
CDC39YCR093W VPS72Q03388 795 aa1.48□□□□□ -2.17
CDC39YCR093W RXT3Q07458 294 aa1.48□□□□□ -2.17
CDC39YCR093W TMA7Q3E764 64 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W SEC12P11655 471 aa1.48□□□□□ -2.17
CDC39YCR093W AKR1P39010 764 aa1.48□□□□□ -2.17
CDC39YCR093W SIT1P39980 628 aa1.48□□□□□ -2.17
CDC39YCR093W ZRG8P40021 1076 aa1.48□□□□□ -2.17
CDC39YCR093W UBP6P43593 499 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W YNR065CP53751 1116 aa1.48□□□□□ -2.17
CDC39YCR093W UME1Q03010 460 aa1.48□□□□□ -2.17
CDC39YCR093W YTM1Q12024 460 aaPredicted RBP1.48□□□□□ -2.17
CDC39YCR093W REC8Q12188 680 aa1.48□□□□□ -2.17
CDC39YCR093W RMP1Q12530 201 aa1.48□□□□□ -2.17
CDC39YCR093W COBP00163 385 aa1.48□□□□□ -2.17
CDC39YCR093W BI4P03879 638 aa1.48□□□□□ -2.17
CDC39YCR093W KAR1P11927 433 aa1.48□□□□□ -2.17
CDC39YCR093W ERS1P17261 260 aa1.48□□□□□ -2.17
CDC39YCR093W NAR1P23503 491 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W CYS3P31373 394 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W LRG1P35688 1017 aa1.48□□□□□ -2.17
CDC39YCR093W EXO5P38289 585 aa1.48□□□□□ -2.17
CDC39YCR093W RNR4P49723 345 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W UTP8P53276 713 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W YNL058CP53947 316 aa1.48□□□□□ -2.17
CDC39YCR093W ENT2Q05785 613 aa1.48□□□□□ -2.17
CDC39YCR093W RPO21P04050 1733 aaKnown RBP1.48□□□□□ -2.17
CDC39YCR093W TRZ1P36159 838 aaPredicted RBP1.48□□□□□ -2.17
CDC39YCR093W POA1P38218 177 aa1.48□□□□□ -2.17
CDC39YCR093W NEM1P38757 446 aa1.48□□□□□ -2.17
CDC39YCR093W YER158CP40095 573 aa1.48□□□□□ -2.17
CDC39YCR093W SPO74P45819 413 aa1.48□□□□□ -2.17
CDC39YCR093W ECL1P48235 211 aa1.48□□□□□ -2.17
CDC39YCR093W YDR344CQ05510 147 aa1.48□□□□□ -2.17
CDC39YCR093W AOS1Q06624 347 aa1.48□□□□□ -2.17
CDC39YCR093W SVS1Q12254 260 aa1.48□□□□□ -2.17
CDC39YCR093W TOP1P04786 769 aa1.48□□□□□ -2.17
CDC39YCR093W YRB30P53107 440 aaPredicted RBP1.48□□□□□ -2.17
CDC39YCR093W SGD1Q06132 899 aa1.48□□□□□ -2.17
CDC39YCR093W TY1A-DR3Q12441 440 aa1.48□□□□□ -2.17
CDC39YCR093W MLS1P30952 554 aa1.47□□□□□ -2.17
CDC39YCR093W SDS22P36047 338 aa1.47□□□□□ -2.17
CDC39YCR093W NUP82P40368 713 aa1.47□□□□□ -2.17
CDC39YCR093W MPH1P40562 993 aa1.47□□□□□ -2.17
CDC39YCR093W HUL5P53119 910 aa1.47□□□□□ -2.17
CDC39YCR093W NHX1Q04121 633 aa1.47□□□□□ -2.17
CDC39YCR093W HPF1Q05164 967 aa1.47□□□□□ -2.17
CDC39YCR093W TY1B-DR3Q99231 1755 aa1.47□□□□□ -2.17
CDC39YCR093W ERG20P08524 352 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W YSC84P32793 468 aa1.47□□□□□ -2.17
CDC39YCR093W PTC7P38797 343 aa1.47□□□□□ -2.17
CDC39YCR093W SFB2P53953 876 aa1.47□□□□□ -2.17
CDC39YCR093W VBA4Q04602 768 aaKnown RBP1.47□□□□□ -2.17
CDC39YCR093W ABF1P14164 731 aa1.47□□□□□ -2.17
CDC39YCR093W DID4P36108 232 aa1.47□□□□□ -2.17
CDC39YCR093W OMA1P36163 345 aa1.47□□□□□ -2.17
CDC39YCR093W MNN1P39106 762 aa1.47□□□□□ -2.17
CDC39YCR093W PIG2P40187 538 aa1.47□□□□□ -2.17
CDC39YCR093W ALY2P47029 1046 aa1.47□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms