RNA–Protein interactions for RNA: YPL104W

MSD1, Transcript of Mitochondrial aspartyl-tRNA synthetase, yeast

Gene MSD1, Length 1,977 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSD1	YPL104W	RGP1	P16664	663 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	CLN2	P20438	545 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	RPB10	P22139	70 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	RFT1	P38206	574 aa	Predicted RBP	4.07	□□□□□ -1.76
MSD1	YPL104W	RXT2	P38255	430 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	NPR3	P38742	1146 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	RRN7	P40992	514 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	OSW7	P43611	510 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	CWC24	P53769	259 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	RPT6	Q01939	405 aa	Known RBP	4.07	□□□□□ -1.76
MSD1	YPL104W	CRF1	Q04930	467 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	ATG20	Q07528	640 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	YBL029C-A	Q3E756	94 aa		4.07	□□□□□ -1.76
MSD1	YPL104W	HXK1	P04806	485 aa	Known RBP	4.06	□□□□□ -1.76
MSD1	YPL104W	TAF13	P11747	167 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	TSR4	P25040	408 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	TIF11	P38912	153 aa	Known RBP	4.06	□□□□□ -1.76
MSD1	YPL104W	YER130C	P39959	443 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	YPT11	P48559	417 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	SGD1	Q06132	899 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	PCL8	Q08966	492 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	DCS2	Q12123	353 aa		4.06	□□□□□ -1.76
MSD1	YPL104W	GPA1	P08539	472 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	CDC6	P09119	513 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	SRM1	P21827	482 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	MSM1	P22438	575 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	PRE8	P23639	250 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	RPL8B	P29453	256 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	YKT6	P36015	200 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	MRPL10	P36520	322 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	PES4	P39684	611 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	VNX1	P42839	908 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	BDS1	Q08347	646 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	CDC53	Q12018	815 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	CLF1	Q12309	687 aa	Predicted RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	CEX1	Q12453	761 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	CIT1	P00890	479 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	MET6	P05694	767 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	GCD6	P32501	712 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	MIC60	P36112	540 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	STV1	P37296	890 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	RRM3	P38766	723 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	PCI8	P40512	444 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	YJL171C	P46992	396 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	SUT1	P53032	299 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	MTO1	P53070	669 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	RIP-Chip
MSD1	YPL104W	ELP4	Q02884	456 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	VPS30	Q02948	557 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	YDR341C	Q05506	607 aa	Known RBP	4.05	□□□□□ -1.76
MSD1	YPL104W	IOC2	Q12072	812 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	NBL1	Q3E7Y6	73 aa		4.05	□□□□□ -1.76
MSD1	YPL104W	RPL22A	P05749	121 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	SWI5	P08153	709 aa		4.04	□□□□□ -1.76
MSD1	YPL104W	VPS1	P21576	704 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	ADP1	P25371	1049 aa		4.04	□□□□□ -1.76
MSD1	YPL104W	URA1	P28272	314 aa	Predicted RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	PET112	P33893	541 aa		4.04	□□□□□ -1.76
MSD1	YPL104W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
MSD1	YPL104W	TOM71	P38825	639 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	UTP7	P40055	554 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	YGL138C	P53122	345 aa		4.04	□□□□□ -1.76
MSD1	YPL104W	TRM44	Q02648	567 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	VMS1	Q04311	632 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	SKG3	Q06315	1026 aa		4.04	□□□□□ -1.76
MSD1	YPL104W	YDL124W	Q07551	312 aa	Known RBP	4.04	□□□□□ -1.76
MSD1	YPL104W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
MSD1	YPL104W	SRP54	P20424	541 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	MCM3	P24279	971 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	PAT1	P25644	796 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	CHS3	P29465	1165 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	MCM4	P30665	933 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	RTG1	P32607	177 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	SAS3	P34218	831 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	TOM20	P35180	183 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	CST26	P38226	397 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	TFG1	P41895	735 aa	Predicted RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	YJL049W	P47048	450 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	VPS4	P52917	437 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	MTC3	P53077	123 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	CUE3	P53137	624 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	FOL1	P53848	824 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	SSL2	Q00578	843 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	TIM50	Q02776	476 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	RPN4	Q03465	531 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	GIS4	Q04233	774 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	DSE3	Q08729	430 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	TIP41	Q12199	356 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	YOR131C	Q12486	218 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	FKS1	P38631	1876 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	TUS1	Q06412	1307 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	PMA1	P05030	918 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	SES1	P07284	462 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	NUC1	P08466	329 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	CYC8	P14922	966 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	ALG1	P16661	449 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	ACE2	P21192	770 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	BMH1	P29311	267 aa	Known RBP	4.03	□□□□□ -1.76
MSD1	YPL104W	VPS35	P34110	944 aa		4.03	□□□□□ -1.76
MSD1	YPL104W	MPE1	P35728	441 aa	Known RBP	4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms