RNA–Protein interactions for RNA: YML097C

VPS9, Transcript of Guanine nucleotide exchange factor (GEF), yeast

Gene VPS9, Length 1,356 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS9	YML097C	THI73	Q07904	523 aa		4.27	□□□□□ -1.73
VPS9	YML097C	GAS5	Q08193	484 aa		4.27	□□□□□ -1.73
VPS9	YML097C	NHA1	Q99271	985 aa		4.27	□□□□□ -1.73
VPS9	YML097C	GSY1	P23337	708 aa		4.26	□□□□□ -1.73
VPS9	YML097C	VBA3	P25594	458 aa		4.26	□□□□□ -1.73
VPS9	YML097C	YRO2	P38079	344 aa		4.26	□□□□□ -1.73
VPS9	YML097C	SAH1	P39954	449 aa	Known RBP	4.26	□□□□□ -1.73
VPS9	YML097C	NIT1	P40447	199 aa		4.26	□□□□□ -1.73
VPS9	YML097C	YJR120W	P47157	116 aa		4.26	□□□□□ -1.73
VPS9	YML097C	BUD9	P53226	547 aa		4.26	□□□□□ -1.73
VPS9	YML097C	SUB1	P54000	292 aa	Known RBP	4.26	□□□□□ -1.73
VPS9	YML097C	FAP7	Q12055	197 aa	Predicted RBP	4.26	□□□□□ -1.73
VPS9	YML097C	GNT1	Q12096	491 aa		4.26	□□□□□ -1.73
VPS9	YML097C	MRC1	P25588	1096 aa		4.25	□□□□□ -1.73
VPS9	YML097C	LIP5	P32875	414 aa		4.25	□□□□□ -1.73
VPS9	YML097C	HSE1	P38753	452 aa		4.25	□□□□□ -1.73
VPS9	YML097C	LEM3	P42838	414 aa		4.25	□□□□□ -1.73
VPS9	YML097C	UBP6	P43593	499 aa	Known RBP	4.25	□□□□□ -1.73
VPS9	YML097C	GCV1	P48015	400 aa		4.25	□□□□□ -1.73
VPS9	YML097C	ELA1	P53861	379 aa	Predicted RBP	4.25	□□□□□ -1.73
VPS9	YML097C	UME1	Q03010	460 aa		4.25	□□□□□ -1.73
VPS9	YML097C	YER152C	P10356	443 aa		4.24	□□□□□ -1.73
VPS9	YML097C	ERS1	P17261	260 aa		4.24	□□□□□ -1.73
VPS9	YML097C	SEC6	P32844	805 aa		4.24	□□□□□ -1.73
VPS9	YML097C	ARL1	P38116	183 aa	Known RBP	4.24	□□□□□ -1.73
VPS9	YML097C	ERT1	P38140	529 aa		4.24	□□□□□ -1.73
VPS9	YML097C	NMD3	P38861	518 aa	Known RBP	4.24	□□□□□ -1.73
VPS9	YML097C	GPB2	P39717	880 aa		4.24	□□□□□ -1.73
VPS9	YML097C	ALG2	P43636	503 aa		4.24	□□□□□ -1.73
VPS9	YML097C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
VPS9	YML097C	SPO21	Q12411	609 aa		4.24	□□□□□ -1.73
VPS9	YML097C	ADE8	P04161	214 aa		4.23	□□□□□ -1.73
VPS9	YML097C	RAD18	P10862	487 aa		4.23	□□□□□ -1.73
VPS9	YML097C	PET10	P36139	283 aa		4.23	□□□□□ -1.73
VPS9	YML097C	PMC1	P38929	1173 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS9	YML097C	VPS53	P47061	822 aa		4.23	□□□□□ -1.73
VPS9	YML097C	YGR045C	P53229	120 aa		4.23	□□□□□ -1.73
VPS9	YML097C	ELG1	Q12050	791 aa		4.23	□□□□□ -1.73
VPS9	YML097C	YLL054C	Q12244	843 aa		4.23	□□□□□ -1.73
VPS9	YML097C	MDM12	Q92328	271 aa		4.23	□□□□□ -1.73
VPS9	YML097C	RPL11A	P0C0W9	174 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	SAC7	P17121	654 aa		4.22	□□□□□ -1.73
VPS9	YML097C	KIP1	P28742	1111 aa		4.22	□□□□□ -1.73
VPS9	YML097C	TYS1	P36421	394 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	BAP2	P38084	609 aa		4.22	□□□□□ -1.73
VPS9	YML097C	QNS1	P38795	714 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	POL5	P39985	1022 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	MXR1	P40029	184 aa		4.22	□□□□□ -1.73
VPS9	YML097C	NOP2	P40991	618 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	SEC26	P41810	973 aa	Known RBP	4.22	□□□□□ -1.73
VPS9	YML097C	BUD21	Q08492	214 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS9	YML097C	RPL11B	Q3E757	174 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS9	YML097C	CDC9	P04819	755 aa		4.21	□□□□□ -1.74
VPS9	YML097C	NAR1	P23503	491 aa	Known RBP	4.21	□□□□□ -1.74
VPS9	YML097C	DBP2	P24783	546 aa	Known RBP	4.21	□□□□□ -1.74
VPS9	YML097C	COQ2	P32378	372 aa		4.21	□□□□□ -1.74
VPS9	YML097C	SWE1	P32944	819 aa		4.21	□□□□□ -1.74
VPS9	YML097C	PAF1	P38351	445 aa		4.21	□□□□□ -1.74
VPS9	YML097C	KIP3	P53086	805 aa	Known RBP	4.21	□□□□□ -1.74
VPS9	YML097C	PEX8	P53248	589 aa		4.21	□□□□□ -1.74
VPS9	YML097C	SRP1	Q02821	542 aa	Known RBP	4.21	□□□□□ -1.74
VPS9	YML097C	GIS4	Q04233	774 aa		4.21	□□□□□ -1.74
VPS9	YML097C	LCD1	Q04377	747 aa		4.21	□□□□□ -1.74
VPS9	YML097C	RSA3	Q05942	220 aa	Known RBP	4.21	□□□□□ -1.74
VPS9	YML097C	TRP3	P00937	484 aa		4.2	□□□□□ -1.74
VPS9	YML097C	RET1	P22276	1149 aa	Known RBP	4.2	□□□□□ -1.74
VPS9	YML097C	MAE1	P36013	669 aa	Known RBP	4.2	□□□□□ -1.74
VPS9	YML097C	PNT1	P38969	423 aa		4.2	□□□□□ -1.74
VPS9	YML097C	DAS1	P47005	663 aa		4.2	□□□□□ -1.74
VPS9	YML097C	GPG1	P53130	126 aa		4.2	□□□□□ -1.74
VPS9	YML097C	SND1	Q04007	877 aa		4.2	□□□□□ -1.74
VPS9	YML097C	DOT1	Q04089	582 aa	Known RBP	4.2	□□□□□ -1.74
VPS9	YML097C	YLR257W	Q06146	321 aa	Known RBP	4.2	□□□□□ -1.74
VPS9	YML097C	YLR001C	Q07895	862 aa		4.2	□□□□□ -1.74
VPS9	YML097C	YPL260W	Q08977	551 aa		4.2	□□□□□ -1.74
VPS9	YML097C	NYV1	Q12255	253 aa		4.2	□□□□□ -1.74
VPS9	YML097C	SRD1	P09007	221 aa		4.19	□□□□□ -1.74
VPS9	YML097C	PRO1	P32264	428 aa		4.19	□□□□□ -1.74
VPS9	YML097C	SCT1	P32784	759 aa		4.19	□□□□□ -1.74
VPS9	YML097C	YBR238C	P38330	731 aa	Known RBP	4.19	□□□□□ -1.74
VPS9	YML097C	RRM3	P38766	723 aa		4.19	□□□□□ -1.74
VPS9	YML097C	TOK1	P40310	691 aa		4.19	□□□□□ -1.74
VPS9	YML097C	SLX4	Q12098	748 aa		4.19	□□□□□ -1.74
VPS9	YML097C	TMA7	Q3E764	64 aa	Known RBP	4.19	□□□□□ -1.74
VPS9	YML097C	YEF3	P16521	1044 aa	Known RBP	4.18	□□□□□ -1.74
VPS9	YML097C	PER1	P25625	357 aa		4.18	□□□□□ -1.74
VPS9	YML097C	PRP19	P32523	503 aa	Known RBP	4.18	□□□□□ -1.74
VPS9	YML097C	REC104	P33323	182 aa		4.18	□□□□□ -1.74
VPS9	YML097C	SPC29	P33419	253 aa		4.18	□□□□□ -1.74
VPS9	YML097C	YKR073C	P36153	106 aa		4.18	□□□□□ -1.74
VPS9	YML097C	SIT1	P39980	628 aa		4.18	□□□□□ -1.74
VPS9	YML097C	YFL054C	P43549	646 aa		4.18	□□□□□ -1.74
VPS9	YML097C	YJL045W	P47052	634 aa		4.18	□□□□□ -1.74
VPS9	YML097C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
VPS9	YML097C	MET13	P53128	600 aa		4.18	□□□□□ -1.74
VPS9	YML097C	VPS72	Q03388	795 aa		4.18	□□□□□ -1.74
VPS9	YML097C	ECM16	Q04217	1267 aa	Known RBP	4.18	□□□□□ -1.74
VPS9	YML097C	HFD1	Q04458	532 aa		4.18	□□□□□ -1.74
VPS9	YML097C	MED7	Q08278	222 aa		4.18	□□□□□ -1.74
VPS9	YML097C	YOR223W	Q12015	292 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 313.7 ms