RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 PNMA8AQ86V59 439 aaPredicted RBP16■□□□□ 0.15
HDGFL3-204ENST00000563790 INSRP06213 1382 aa16■□□□□ 0.15
HDGFL3-204ENST00000563790 NRXN2Q9P2S2 1712 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 LOC102724428A0A0B4J2F2 783 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 EPHX2P34913 555 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 SIK1P57059 783 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 MPRIPQ6WCQ1 1025 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 HHIPL1Q96JK4 782 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 HACL1Q9UJ83 578 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 ZNF831Q5JPB2 1677 aa15.99■□□□□ 0.15
HDGFL3-204ENST00000563790 TTLL6Q8N841 843 aa15.98■□□□□ 0.15
HDGFL3-204ENST00000563790 SAGE1Q9NXZ1 904 aa15.98■□□□□ 0.15
HDGFL3-204ENST00000563790 PKN2Q16513 984 aaKnown RBP15.97■□□□□ 0.15
HDGFL3-204ENST00000563790 ARHGEF1Q92888 912 aaKnown RBP15.97■□□□□ 0.15
HDGFL3-204ENST00000563790 RTCBQ9Y3I0 505 aaKnown RBP15.97■□□□□ 0.15
HDGFL3-204ENST00000563790 LTBP3Q9NS15 1303 aa15.96■□□□□ 0.15
HDGFL3-204ENST00000563790 FMR1Q06787 632 aaKnown RBP eCLIP15.96■□□□□ 0.15
HDGFL3-204ENST00000563790 DDR1Q08345 913 aa15.96■□□□□ 0.15
HDGFL3-204ENST00000563790 ITPK1Q13572 414 aa15.96■□□□□ 0.15
HDGFL3-204ENST00000563790 SAPCD2Q86UD0 394 aa15.96■□□□□ 0.15
HDGFL3-204ENST00000563790 OTUD5Q96G74 571 aa15.95■□□□□ 0.14
HDGFL3-204ENST00000563790 TTC21BQ7Z4L5 1316 aa15.94■□□□□ 0.14
HDGFL3-204ENST00000563790 SMG6Q86US8 1419 aaKnown RBP15.94■□□□□ 0.14
HDGFL3-204ENST00000563790 PRUNE2Q8WUY3 3088 aa15.93■□□□□ 0.14
HDGFL3-204ENST00000563790 RFC4P35249 363 aa15.93■□□□□ 0.14
HDGFL3-204ENST00000563790 ITGAEP38570 1179 aa15.93■□□□□ 0.14
HDGFL3-204ENST00000563790 NOGQ13253 232 aa15.93■□□□□ 0.14
HDGFL3-204ENST00000563790 TTC21AQ8NDW8 1320 aa15.93■□□□□ 0.14
HDGFL3-204ENST00000563790 AKAP4Q5JQC9 854 aa15.92■□□□□ 0.14
HDGFL3-204ENST00000563790 ARFGEF2Q9Y6D5 1785 aa15.92■□□□□ 0.14
HDGFL3-204ENST00000563790 COL9A1P20849 921 aa15.91■□□□□ 0.14
HDGFL3-204ENST00000563790 ZIC5Q96T25 663 aa15.91■□□□□ 0.14
HDGFL3-204ENST00000563790 CABP2Q9NPB3 220 aa15.91■□□□□ 0.14
HDGFL3-204ENST00000563790 CABP1Q9NZU7 370 aa15.91■□□□□ 0.14
HDGFL3-204ENST00000563790 ANKRD31Q8N7Z5 1873 aa15.91■□□□□ 0.14
HDGFL3-204ENST00000563790 USP31Q70CQ4 1352 aa15.9■□□□□ 0.14
HDGFL3-204ENST00000563790 PLA2G5P39877 138 aa15.9■□□□□ 0.14
HDGFL3-204ENST00000563790 SRPK2P78362 688 aaKnown RBP15.9■□□□□ 0.14
HDGFL3-204ENST00000563790 EYSQ5T1H1 3165 aa15.89■□□□□ 0.13
HDGFL3-204ENST00000563790 SLX4Q8IY92 1834 aa15.89■□□□□ 0.13
HDGFL3-204ENST00000563790 ATP6V1AP38606 617 aa15.89■□□□□ 0.13
HDGFL3-204ENST00000563790 TAOK3Q9H2K8 898 aa15.89■□□□□ 0.13
HDGFL3-204ENST00000563790 NCOR1O75376 2440 aa15.88■□□□□ 0.13
HDGFL3-204ENST00000563790 POLRMTO00411 1230 aaKnown RBP15.88■□□□□ 0.13
HDGFL3-204ENST00000563790 PIGBQ92521 554 aa15.88■□□□□ 0.13
HDGFL3-204ENST00000563790 CGNL1Q0VF96 1302 aa15.88■□□□□ 0.13
HDGFL3-204ENST00000563790 MON2Q7Z3U7 1717 aa15.88■□□□□ 0.13
HDGFL3-204ENST00000563790 TRAF5O00463 557 aa15.87■□□□□ 0.13
HDGFL3-204ENST00000563790 HOXD11P31277 338 aaPredicted RBP15.87■□□□□ 0.13
HDGFL3-204ENST00000563790 COL11A2P13942 1736 aaPredicted RBP15.87■□□□□ 0.13
HDGFL3-204ENST00000563790 CD163L1Q9NR16 1453 aa15.86■□□□□ 0.13
HDGFL3-204ENST00000563790 FKBP8Q14318 412 aa15.86■□□□□ 0.13
HDGFL3-204ENST00000563790 RNF123Q5XPI4 1314 aa15.86■□□□□ 0.13
HDGFL3-204ENST00000563790 RC3H1Q5TC82 1133 aaKnown RBP15.85■□□□□ 0.13
HDGFL3-204ENST00000563790 RNF186Q9NXI6 227 aa15.85■□□□□ 0.13
HDGFL3-204ENST00000563790 RPS6KA4O75676 772 aa15.84■□□□□ 0.13
HDGFL3-204ENST00000563790 TRPA1O75762 1119 aa15.84■□□□□ 0.13
HDGFL3-204ENST00000563790 ZNF541Q9H0D2 1346 aa15.84■□□□□ 0.13
HDGFL3-204ENST00000563790 BCORQ6W2J9 1755 aa15.84■□□□□ 0.13
HDGFL3-204ENST00000563790 POTEFA5A3E0 1075 aa15.83■□□□□ 0.12
HDGFL3-204ENST00000563790 TM4SF1P30408 202 aa15.83■□□□□ 0.12
HDGFL3-204ENST00000563790 PCDH11XQ9BZA7 1347 aa15.83■□□□□ 0.12
HDGFL3-204ENST00000563790 PCDH11YQ9BZA8 1340 aa15.83■□□□□ 0.12
HDGFL3-204ENST00000563790 C21orf2O43822 256 aa15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 FBXO46Q6PJ61 603 aaPredicted RBP15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 ZNF692Q9BU19 519 aaPredicted RBP15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 RBM27Q9P2N5 1060 aaKnown RBP15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 CNTNAP4Q9C0A0 1308 aa15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 USP42Q9H9J4 1324 aaKnown RBP15.82■□□□□ 0.12
HDGFL3-204ENST00000563790 KDRP35968 1356 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 MAP3K19Q56UN5 1328 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 CHRDL2Q6WN34 429 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 C2CD5Q86YS7 1000 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 IP6K1Q92551 441 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 LTV1Q96GA3 475 aaPredicted RBP15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 SNX27Q96L92 541 aa15.81■□□□□ 0.12
HDGFL3-204ENST00000563790 ERBB4Q15303 1308 aa15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 H0YGN5 161 aa15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 H0YIN7 160 aa15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 CELF2O95319 508 aaKnown RBP15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 FAM122AQ96E09 287 aa15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 SRP68Q9UHB9 627 aaKnown RBP15.8■□□□□ 0.12
HDGFL3-204ENST00000563790 ASAP1Q9ULH1 1129 aa15.79■□□□□ 0.12
HDGFL3-204ENST00000563790 POLR2AP24928 1970 aaKnown RBP15.78■□□□□ 0.12
HDGFL3-204ENST00000563790 CYP27B1O15528 508 aa15.77■□□□□ 0.12
HDGFL3-204ENST00000563790 INTS3Q68E01 1043 aaKnown RBP15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 BICDL1Q6ZP65 573 aa15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 RAPGEFL1Q9UHV5 662 aa15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 HDAC9Q9UKV0 1011 aa15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 BDP1A6H8Y1 2624 aa15.76■□□□□ 0.11
HDGFL3-204ENST00000563790 FAM155AB1AL88 458 aaPredicted RBP15.75■□□□□ 0.11
HDGFL3-204ENST00000563790 GPC2Q8N158 579 aa15.75■□□□□ 0.11
HDGFL3-204ENST00000563790 SYNE4Q8N205 404 aa15.75■□□□□ 0.11
HDGFL3-204ENST00000563790 STXBP5LQ9Y2K9 1186 aa15.75■□□□□ 0.11
HDGFL3-204ENST00000563790 RAPGEF4Q8WZA2 1011 aa15.74■□□□□ 0.11
HDGFL3-204ENST00000563790 KIF23Q02241 960 aaPredicted RBP15.73■□□□□ 0.11
HDGFL3-204ENST00000563790 SLC4A9Q96Q91 983 aa15.73■□□□□ 0.11
HDGFL3-204ENST00000563790 PRO3102Q9H379 93 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms