RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 MIS18AQ9NYP9 233 aa13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 KLHL40Q2TBA0 621 aa13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 TNNQ9UQP3 1299 aa13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 TPM3P06753 285 aa13.83□□□□□ -0.19
CLSTN3-201ENST00000266546 RPAP2Q8IXW5 612 aaPredicted RBP13.83□□□□□ -0.19
CLSTN3-201ENST00000266546 C9orf78Q9NZ63 289 aaPredicted RBP13.83□□□□□ -0.19
CLSTN3-201ENST00000266546 ERC2O15083 957 aa13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 HSP90AB4PQ58FF6 505 aa13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 LETM1O95202 739 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 CHRNA2Q15822 529 aa13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 BAG4O95429 457 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
CLSTN3-201ENST00000266546 LMTK3Q96Q04 1460 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 UBTFL1P0CB47 393 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 C8orf58Q8NAV2 365 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 GNAI2P04899 355 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 ZKSCAN1P17029 563 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 HOXB7P09629 217 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 BMP2KLQ5H9B9 411 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 NBPF6Q5VWK0 638 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 SASS6Q6UVJ0 657 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 RUFY2Q8WXA3 655 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 NBPF4Q96M43 638 aa13.82□□□□□ -0.2
CLSTN3-201ENST00000266546 H3BQV1 296 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 IFFO2Q5TF58 517 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 BICD2Q8TD16 824 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 SRCIN1Q9C0H9 1055 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 PODXL2Q9NZ53 605 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 FIBPO43427 364 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 RIC3Q7Z5B4 369 aa13.81□□□□□ -0.2
CLSTN3-201ENST00000266546 RLBP1P12271 317 aa13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 DBF4Q9UBU7 674 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 CABLES1Q8TDN4 633 aa13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 SF3B2Q13435 895 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 HDAC1Q13547 482 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-201ENST00000266546 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 BRPF1P55201 1214 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.79□□□□□ -0.23e-7■■□□□ 13.3
CLSTN3-201ENST00000266546 KIF3AQ9Y496 699 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 ZNF335Q9H4Z2 1342 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 ANKRD26Q9UPS8 1709 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 ZNF853P0CG23 659 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 FAM184AQ8NB25 1140 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 SPATA31A3Q5VYP0 1347 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 WDR33Q9C0J8 1336 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 G3V3G9 751 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 GNL2Q13823 731 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 DCAF8Q5TAQ9 597 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 TBC1D9Q6ZT07 1266 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 SPC24Q8NBT2 197 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 DDX54Q8TDD1 881 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 PRDM10Q9NQV6 1147 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 IQSEC2Q5JU85 1478 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 RNMTO43148 476 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 ZCRB1Q8TBF4 217 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 SNX21Q969T3 373 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 HYPKQ9NX55 129 aa13.79□□□□□ -0.2
CLSTN3-201ENST00000266546 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 ZNF142P52746 1687 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 COL3A1P02461 1466 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 FLIIQ13045 1269 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 SF3A1Q15459 793 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 DCAF5Q96JK2 942 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 FMNL2Q96PY5 1086 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 MCM5P33992 734 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 TSPYL6Q8N831 410 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 TRIM5Q9C035 493 aa13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 BCL11BQ9C0K0 894 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-201ENST00000266546 TNS3Q68CZ2 1445 aa13.77□□□□□ -0.2
CLSTN3-201ENST00000266546 BRINP3Q76B58 766 aa13.77□□□□□ -0.2
CLSTN3-201ENST00000266546 IL2RBP14784 551 aa13.77□□□□□ -0.21
CLSTN3-201ENST00000266546 DYNC1I1O14576 645 aa13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 AIMP1Q12904 312 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 SMC5Q8IY18 1101 aa13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 SSH2Q76I76 1423 aa13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 XRN1Q8IZH2 1706 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 RAB3GAP1Q15042 981 aa13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 SETD1AO15047 1707 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-201ENST00000266546 TPD52L1Q16890 204 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 ZSCAN23Q3MJ62 389 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 OFD1O75665 1012 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 PDCL2Q8N4E4 241 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 DDX17Q92841 729 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 ERBB3P21860 1342 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 PCDH11XQ9BZA7 1347 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 PCDH11YQ9BZA8 1340 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 NUCB1Q02818 461 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 PPP1R1BQ9UD71 204 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 KDRP35968 1356 aa13.75□□□□□ -0.21
CLSTN3-201ENST00000266546 MAP2P11137 1827 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 USP19O94966 1318 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 EXOC5O00471 708 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 SURF6O75683 361 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 TEX13AQ9BXU3 409 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 TMOD3Q9NYL9 352 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 MON2Q7Z3U7 1717 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 TULP1O00294 542 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms