RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	ALF1	P53904	254 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	RTC5	Q12108	567 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	SEC39	Q12745	709 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	YRF1-2	P40105	1681 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	SWI1	P09547	1314 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	GAL1	P04385	528 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	MRC1	P25588	1096 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	CPS1	P27614	576 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	ITR1	P30605	584 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	RIM11	P38615	370 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	CCT3	P39077	534 aa	Known RBP	5.46	□□□□□ -1.54
SEC39	YLR440C	YJL070C	P40361	888 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	NUP84	P52891	726 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	YNL144C	P53907	740 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	RNT1	Q02555	471 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	PGC1	Q08959	321 aa		5.46	□□□□□ -1.54
SEC39	YLR440C	RAD4	P14736	754 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	RME1	P32338	300 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	SEC8	P32855	1065 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	MNN1	P39106	762 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	YEN1	P40028	759 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	IES5	P40060	125 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	YRB1	P41920	201 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	VTC4	P47075	721 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	HAS1	Q03532	505 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	UTP14	Q04500	899 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	TEF1	P02994	458 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	KSS1	P14681	368 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	NTG1	P31378	399 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	PXA2	P34230	853 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	SET1	P38827	1080 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	SAP185	P40856	1058 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	MAD1	P40957	749 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	MET12	P46151	657 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	TRF5	P48561	642 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	NUP42	P49686	430 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	CWH41	P53008	833 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	TAF8	Q03750	510 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	BRX1	Q08235	291 aa	Known RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	CIR2	Q08822	631 aa		5.45	□□□□□ -1.54
SEC39	YLR440C	RKM1	Q08961	583 aa	Predicted RBP	5.45	□□□□□ -1.54
SEC39	YLR440C	HEM1	P09950	548 aa	Predicted RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	GLK1	P17709	500 aa	Known RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	RAD27	P26793	382 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	CTM1	P38818	585 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	PEX8	P53248	589 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	UTP22	P53254	1237 aa	Predicted RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	FOL1	P53848	824 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	RCM1	P53972	490 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	DNL4	Q08387	944 aa	Predicted RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.44	□□□□□ -1.54	not detected
SEC39	YLR440C	RGP1	P16664	663 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	EUG1	P32474	517 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	MNR2	P35724	969 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	SET3	P36124	751 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	NOP4	P37838	685 aa	Known RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	PSY4	P38193	441 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	PIH1	P38768	344 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	NDE1	P40215	560 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	YPP1	P46951	817 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	IML2	P47031	731 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	YGR153W	P48238	217 aa		5.44	□□□□□ -1.54
SEC39	YLR440C	PTA1	Q01329	785 aa	Predicted RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	TSR2	Q06672	205 aa	Known RBP	5.44	□□□□□ -1.54
SEC39	YLR440C	YMR084W	A2P2R3	262 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	RPC40	P07703	335 aa	Known RBP	5.43	□□□□□ -1.54
SEC39	YLR440C	ATE1	P16639	503 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	PMA2	P19657	947 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	PRP5	P21372	849 aa	Predicted RBP	5.43	□□□□□ -1.54
SEC39	YLR440C	PLC1	P32383	869 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	MRP8	P35719	219 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	NUP120	P35729	1037 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	SPT8	P38915	602 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	COG6	P53959	839 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	CRN1	Q06440	651 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	BDF2	Q07442	638 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	TAF3	Q12297	353 aa		5.43	□□□□□ -1.54
SEC39	YLR440C	HSP104	P31539	908 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	KRE6	P32486	720 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	BUD2	P33314	1104 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	BMH2	P34730	273 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	SMC2	P38989	1170 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	MTW1	P39731	289 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	AGX1	P43567	385 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	SAE2	P46946	345 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	INP52	P50942	1183 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	ARP5	P53946	755 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	SAS4	Q04003	481 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	GAD1	Q04792	585 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	SEC2	P17065	759 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	CDC48	P25694	835 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	ECM4	P36156	370 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	OLA1	P38219	394 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	YSW1	P38280	609 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	HAL5	P38970	855 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	BIM1	P40013	344 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	UBP2	Q01476	1272 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	YLR326W	Q06170	240 aa	Known RBP	5.42	□□□□□ -1.54
SEC39	YLR440C	ESC8	Q08119	714 aa		5.42	□□□□□ -1.54
SEC39	YLR440C	ADE8	P04161	214 aa		5.41	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms