RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	TY4A-J	P47023	414 aa		5.09	□□□□□ -1.59
SSH4	YKL124W	DSE3	Q08729	430 aa		5.09	□□□□□ -1.59
SSH4	YKL124W	MSC6	Q08818	692 aa	Known RBP	5.09	□□□□□ -1.59
SSH4	YKL124W	ERP3	Q12403	225 aa		5.09	□□□□□ -1.59
SSH4	YKL124W	PDC1	P06169	563 aa	Known RBP	5.09	□□□□□ -1.6
SSH4	YKL124W	GAL11	P19659	1081 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	YUR1	P26725	428 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	UGA4	P32837	571 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	TFC4	P33339	1025 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	SHP1	P34223	423 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	DBP7	P36120	742 aa	Known RBP	5.09	□□□□□ -1.6
SSH4	YKL124W	GPT2	P36148	743 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	NOC2	P39744	710 aa	Known RBP	5.09	□□□□□ -1.6
SSH4	YKL124W	TPM2	P40414	161 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	LIF1	P53150	421 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	ECM23	Q02710	187 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	SLD5	Q03406	294 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	SUE1	Q06524	206 aa		5.09	□□□□□ -1.6
SSH4	YKL124W	VIP1	Q06685	1146 aa	Known RBP	5.09	□□□□□ -1.6
SSH4	YKL124W	HEM1	P09950	548 aa	Predicted RBP	5.08	□□□□□ -1.6
SSH4	YKL124W	POX1	P13711	748 aa		5.08	□□□□□ -1.6
SSH4	YKL124W	RPL8A	P17076	256 aa	Known RBP	5.08	□□□□□ -1.6
SSH4	YKL124W	FMS1	P50264	508 aa		5.08	□□□□□ -1.6
SSH4	YKL124W	PTA1	Q01329	785 aa	Predicted RBP	5.08	□□□□□ -1.6
SSH4	YKL124W	YMR321C	Q04898	105 aa		5.08	□□□□□ -1.6
SSH4	YKL124W	TRM11	Q12463	433 aa		5.08	□□□□□ -1.6
SSH4	YKL124W	YOR111W	Q99210	232 aa		5.08	□□□□□ -1.6
SSH4	YKL124W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.07	□□□□□ -1.6	not detected
SSH4	YKL124W	SNA3	P14359	133 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	RPA135	P22138	1203 aa	Known RBP	5.07	□□□□□ -1.6
SSH4	YKL124W	DLD1	P32891	587 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	PAN5	P38787	379 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	SOL3	P38858	249 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	PMC1	P38929	1173 aa	Predicted RBP	5.07	□□□□□ -1.6
SSH4	YKL124W	AIM9	P40053	627 aa	Known RBP	5.07	□□□□□ -1.6
SSH4	YKL124W	SKP2	P42843	763 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	HXT17	P53631	564 aa		5.07	□□□□□ -1.6
SSH4	YKL124W	ESF1	Q06344	628 aa	Known RBP	5.07	□□□□□ -1.6
SSH4	YKL124W	PGA3	Q12746	312 aa	Known RBP	5.07	□□□□□ -1.6
SSH4	YKL124W	CIT1	P00890	479 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	PWP2	P25635	923 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	REG2	P38232	338 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	OPY1	P38271	328 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	HXT13	P39924	564 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	TAF13	P11747	167 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	SPT16	P32558	1035 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	FBP26	P32604	452 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	TOM20	P35180	183 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	NDT80	P38830	627 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	CCT3	P39077	534 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	RPT2	P40327	437 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	MID1	P41821	548 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	YGL039W	P53183	348 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	DAK1	P54838	584 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	YDR341C	Q05506	607 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	YLR326W	Q06170	240 aa	Known RBP	5.06	□□□□□ -1.6
SSH4	YKL124W	RTP1	Q12751	981 aa		5.06	□□□□□ -1.6
SSH4	YKL124W	CHL1	P22516	861 aa	Predicted RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	SLD2	P34252	453 aa		5.05	□□□□□ -1.6
SSH4	YKL124W	BMH2	P34730	273 aa	Known RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	MPE1	P35728	441 aa	Known RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	PRE3	P38624	215 aa		5.05	□□□□□ -1.6
SSH4	YKL124W	GUA1	P38625	525 aa	Known RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	MSC7	P38694	644 aa		5.05	□□□□□ -1.6
SSH4	YKL124W	SCS3	P53012	380 aa		5.05	□□□□□ -1.6
SSH4	YKL124W	ELP4	Q02884	456 aa	Known RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	GIR2	Q03768	265 aa	Predicted RBP	5.05	□□□□□ -1.6
SSH4	YKL124W	RKM4	Q12504	494 aa		5.05	□□□□□ -1.6
SSH4	YKL124W	MATALPHA2	P0CY08	210 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	HMLALPHA2	P0CY09	210 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	SRO9	P25567	434 aa	Known RBP	5.04	□□□□□ -1.6
SSH4	YKL124W	CLB5	P30283	435 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	AKR1	P39010	764 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	HMF1	P40037	129 aa	Known RBP	5.04	□□□□□ -1.6
SSH4	YKL124W	ASE1	P50275	885 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	YGR273C	P53329	174 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	YNR021W	P53723	404 aa	Known RBP	5.04	□□□□□ -1.6
SSH4	YKL124W	GDE1	Q02979	1223 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	OYE2	Q03558	400 aa	Known RBP	5.04	□□□□□ -1.6
SSH4	YKL124W	YPR117W	Q06116	2489 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	MOT1	P32333	1867 aa		5.04	□□□□□ -1.6
SSH4	YKL124W	AI4	P03878	556 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	SES1	P07284	462 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	AFT1	P22149	690 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	GRS1	P38088	690 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	RXT2	P38255	430 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	YKE2	P52553	114 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	YGL138C	P53122	345 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	YVH1	Q02256	364 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	TLG1	Q03322	224 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	FKS1	P38631	1876 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	MET6	P05694	767 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	KEX1	P09620	729 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	TRL1	P09880	827 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	MIP1	P15801	1254 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	RME1	P32338	300 aa	Known RBP	5.03	□□□□□ -1.6
SSH4	YKL124W	KTR2	P33550	425 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	SAS3	P34218	831 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	FLR1	P38124	548 aa		5.03	□□□□□ -1.6
SSH4	YKL124W	SUL1	P38359	859 aa		5.03	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 57.5 ms