RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	NEO1	P40527	1151 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	FET4	P40988	552 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	PFD1	P46988	109 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	MTR4	P47047	1073 aa	Known RBP	5.33	□□□□□ -1.56
VMA22	YHR060W	YGL140C	P53120	1219 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	PEX13	P80667	386 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	NOG1	Q02892	647 aa	Known RBP	5.33	□□□□□ -1.56
VMA22	YHR060W	SPO71	Q03868	1245 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	TDA6	Q06466	467 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	HDA2	Q06629	674 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	RKM4	Q12504	494 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	TMA17	Q12513	150 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	TY4A-H	Q6Q5P6	413 aa		5.33	□□□□□ -1.56
VMA22	YHR060W	HVG1	P0CE11	249 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	TRX2	P22803	104 aa	Known RBP	5.32	□□□□□ -1.56
VMA22	YHR060W	MDJ1	P35191	511 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	RER2	P35196	286 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	SEA4	P38164	1038 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	AMN1	P38285	549 aa	Predicted RBP	5.32	□□□□□ -1.56
VMA22	YHR060W	RIM11	P38615	370 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	ERP2	P39704	215 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	GDH3	P39708	457 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	YNR065C	P53751	1116 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	DSE4	P53753	1117 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	YMR187C	Q03236	431 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	ATG16	Q03818	150 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	FAP7	Q12055	197 aa	Predicted RBP	5.32	□□□□□ -1.56
VMA22	YHR060W	YPR053C	Q6Q5F3	151 aa		5.32	□□□□□ -1.56
VMA22	YHR060W	COB	P00163	385 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	PRP5	P21372	849 aa	Predicted RBP	5.31	□□□□□ -1.56
VMA22	YHR060W	NPR1	P22211	790 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	MSH3	P25336	1018 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	MFT1	P33441	392 aa	Known RBP	5.31	□□□□□ -1.56
VMA22	YHR060W	YKL077W	P36081	392 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	FUI1	P38196	639 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	NIT1	P40447	199 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	TED1	P40533	473 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	LSB6	P42951	607 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	RTA1	P53047	317 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	YNL193W	P53870	558 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	ALO1	P54783	526 aa	Known RBP	5.31	□□□□□ -1.56
VMA22	YHR060W	UME1	Q03010	460 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	YLR225C	Q05948	407 aa	Known RBP	5.31	□□□□□ -1.56
VMA22	YHR060W	YOR378W	Q08902	515 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	REC8	Q12188	680 aa		5.31	□□□□□ -1.56
VMA22	YHR060W	INO1	P11986	533 aa		5.3	□□□□□ -1.56
VMA22	YHR060W	YKL107W	P34251	309 aa		5.3	□□□□□ -1.56
VMA22	YHR060W	TRZ1	P36159	838 aa	Predicted RBP	5.3	□□□□□ -1.56
VMA22	YHR060W	PAN5	P38787	379 aa		5.3	□□□□□ -1.56
VMA22	YHR060W	SDA1	P53313	767 aa	Known RBP	5.3	□□□□□ -1.56
VMA22	YHR060W	THI73	Q07904	523 aa		5.3	□□□□□ -1.56
VMA22	YHR060W	YLL054C	Q12244	843 aa		5.3	□□□□□ -1.56
VMA22	YHR060W	CMR1	Q12510	522 aa	Known RBP	5.3	□□□□□ -1.56
VMA22	YHR060W	SFA1	P32771	386 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	ATG14	P38270	344 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	RRM3	P38766	723 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	CCC2	P38995	1004 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	NOC2	P39744	710 aa	Known RBP	5.29	□□□□□ -1.56
VMA22	YHR060W	HXT13	P39924	564 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	VPS27	P40343	622 aa	Known RBP	5.29	□□□□□ -1.56
VMA22	YHR060W	HXT17	P53631	564 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	HXT15	P54854	567 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.29	□□□□□ -1.56	RIP-Chip
VMA22	YHR060W	HAS1	Q03532	505 aa	Known RBP	5.29	□□□□□ -1.56
VMA22	YHR060W	HFD1	Q04458	532 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	TRE2	Q08693	809 aa		5.29	□□□□□ -1.56
VMA22	YHR060W	TOM70	P07213	617 aa	Known RBP	5.28	□□□□□ -1.56
VMA22	YHR060W	YEF3	P16521	1044 aa	Known RBP	5.28	□□□□□ -1.56
VMA22	YHR060W	DUR3	P33413	735 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	MTC2	P34246	357 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	MAE1	P36013	669 aa	Known RBP	5.28	□□□□□ -1.56
VMA22	YHR060W	BET3	P36149	193 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	DSS1	P39112	969 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	POL5	P39985	1022 aa	Known RBP	5.28	□□□□□ -1.56
VMA22	YHR060W	PEA2	P40091	420 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	TY4A-J	P47023	414 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	YGR021W	P53212	290 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	MDM12	Q92328	271 aa		5.28	□□□□□ -1.56
VMA22	YHR060W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.27	□□□□□ -1.57	not detected
VMA22	YHR060W	HTS1	P07263	546 aa	Known RBP	5.27	□□□□□ -1.57
VMA22	YHR060W	SYP1	P25623	870 aa	Known RBP	5.27	□□□□□ -1.57
VMA22	YHR060W	HIR1	P32479	840 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	DOM34	P33309	386 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	SKN7	P38889	622 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	BUD9	P53226	547 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	SND1	Q04007	877 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	EST2	Q06163	884 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	YIG1	Q08956	461 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	ELG1	Q12050	791 aa		5.27	□□□□□ -1.57
VMA22	YHR060W	RSC6	P25632	483 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	MKK2	P32491	506 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	PTH2	P34222	208 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	YEL1	P34225	687 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	MOT2	P34909	587 aa	Known RBP	5.26	□□□□□ -1.57
VMA22	YHR060W	TAT1	P38085	619 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	RDH54	P38086	958 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	YBR071W	P38243	211 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	CNN1	P43618	361 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	GCV1	P48015	400 aa		5.26	□□□□□ -1.57
VMA22	YHR060W	HNT2	P49775	206 aa		5.26	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms