RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	IRR1	P40541	1150 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	SLS1	P42900	643 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	FMP25	Q08023	583 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	YLR125W	Q12138	136 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	ERR1	P0CX10	437 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	ERR2	P0CX11	437 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	SYP1	P25623	870 aa	Known RBP	6.39	□□□□□ -1.39
CAF16	YFL028C	ATG14	P38270	344 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	GUP1	P53154	560 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	SOK2	P53438	785 aa	Predicted RBP	6.39	□□□□□ -1.39
CAF16	YFL028C	RAT1	Q02792	1006 aa	Known RBP	6.39	□□□□□ -1.39
CAF16	YFL028C	UTP5	Q04177	643 aa	Known RBP	6.39	□□□□□ -1.39
CAF16	YFL028C	EAF1	Q06337	982 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	YIG1	Q08956	461 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	YDR461C-A	Q2V2P7	80 aa		6.39	□□□□□ -1.39
CAF16	YFL028C	CIT1	P00890	479 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	SBP1	P10080	294 aa	Known RBP	6.38	□□□□□ -1.39
CAF16	YFL028C	TSR4	P25040	408 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	THI4	P32318	326 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	ADD66	P36040	267 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	MCM7	P38132	845 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	CEM1	P39525	442 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	ERP6	P53198	216 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	YNR063W	P53749	607 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	SRC1	Q03707	834 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	TIF35	Q04067	274 aa	Known RBP	6.38	□□□□□ -1.39
CAF16	YFL028C	AOS1	Q06624	347 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	YGR161W-C	Q3E744	92 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	LTE1	P07866	1435 aa		6.38	□□□□□ -1.39
CAF16	YFL028C	MLP2	P40457	1679 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	SNT2	P53127	1403 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	CAN1	P04817	590 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	6.37	□□□□□ -1.39	not detected
CAF16	YFL028C	YKL107W	P34251	309 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	PBY1	P38254	753 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	PFD1	P46988	109 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	LYS5	P50113	272 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	YDR444W	Q04093	687 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	LCB5	Q06147	687 aa	Known RBP	6.37	□□□□□ -1.39
CAF16	YFL028C	UBX5	Q06682	500 aa		6.37	□□□□□ -1.39
CAF16	YFL028C	ULS1	Q08562	1619 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	GGA2	P38817	585 aa	Known RBP	6.36	□□□□□ -1.39
CAF16	YFL028C	ALR2	P43553	858 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	CNN1	P43618	361 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	YGL176C	P46945	554 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	YJR142W	P47173	342 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	SYT1	Q06836	1226 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	RKM4	Q12504	494 aa		6.36	□□□□□ -1.39
CAF16	YFL028C	VPS15	P22219	1454 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	DBP5	P20449	482 aa	Known RBP	6.35	□□□□□ -1.39
CAF16	YFL028C	MET22	P32179	357 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	MBP1	P39678	833 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	YIR007W	P40566	764 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	HUL4	P40985	892 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	LEM3	P42838	414 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	YPL066W	Q12194	479 aa		6.35	□□□□□ -1.39
CAF16	YFL028C	STH1	P32597	1359 aa		6.34	□□□□□ -1.39
CAF16	YFL028C	PRP9	P19736	530 aa	Known RBP	6.34	□□□□□ -1.39
CAF16	YFL028C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.34	□□□□□ -1.39	not detected
CAF16	YFL028C	PAN5	P38787	379 aa		6.34	□□□□□ -1.39
CAF16	YFL028C	GIP2	P40036	548 aa		6.34	□□□□□ -1.39
CAF16	YFL028C	SPO74	P45819	413 aa		6.34	□□□□□ -1.39
CAF16	YFL028C	SPO71	Q03868	1245 aa		6.34	□□□□□ -1.39
CAF16	YFL028C	PDR15	Q04182	1529 aa	Known RBP	6.34	□□□□□ -1.39
CAF16	YFL028C	GEA2	P39993	1459 aa	Known RBP	6.34	□□□□□ -1.4
CAF16	YFL028C	AFG2	P32794	780 aa		6.33	□□□□□ -1.4
CAF16	YFL028C	REI1	P38344	393 aa	Predicted RBP	6.33	□□□□□ -1.4
CAF16	YFL028C	SNF7	P39929	240 aa	Known RBP	6.33	□□□□□ -1.4
CAF16	YFL028C	TED1	P40533	473 aa		6.33	□□□□□ -1.4
CAF16	YFL028C	MSH4	P40965	878 aa	Predicted RBP	6.33	□□□□□ -1.4
CAF16	YFL028C	UTP8	P53276	713 aa	Known RBP	6.33	□□□□□ -1.4
CAF16	YFL028C	MEC3	Q02574	474 aa		6.33	□□□□□ -1.4
CAF16	YFL028C	UTP14	Q04500	899 aa	Known RBP	6.33	□□□□□ -1.4
CAF16	YFL028C	YMR074C	Q04773	145 aa		6.33	□□□□□ -1.4
CAF16	YFL028C	BNI1	P41832	1953 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	ARL1	P38116	183 aa	Known RBP	6.32	□□□□□ -1.4
CAF16	YFL028C	ALG3	P38179	458 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	GCV1	P48015	400 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	CAF120	P53836	1060 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	TAF8	Q03750	510 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	RKM2	Q03942	479 aa		6.32	□□□□□ -1.4
CAF16	YFL028C	ALG6	Q12001	544 aa	Known RBP	6.32	□□□□□ -1.4
CAF16	YFL028C	PDC5	P16467	563 aa	Known RBP	6.31	□□□□□ -1.4
CAF16	YFL028C	MLS1	P30952	554 aa		6.31	□□□□□ -1.4
CAF16	YFL028C	HNT2	P49775	206 aa		6.31	□□□□□ -1.4
CAF16	YFL028C	RTA1	P53047	317 aa		6.31	□□□□□ -1.4
CAF16	YFL028C	YDL124W	Q07551	312 aa	Known RBP	6.31	□□□□□ -1.4
CAF16	YFL028C	PTC5	Q12511	572 aa		6.31	□□□□□ -1.4
CAF16	YFL028C	NAR1	P23503	491 aa	Known RBP	6.3	□□□□□ -1.4
CAF16	YFL028C	YAR028W	P39548	234 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	POL5	P39985	1022 aa	Known RBP	6.3	□□□□□ -1.4
CAF16	YFL028C	MPH1	P40562	993 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	GIS4	Q04233	774 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	AVO1	Q08236	1176 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	LAP2	Q10740	671 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	SPO14	P36126	1683 aa		6.3	□□□□□ -1.4
CAF16	YFL028C	SRM1	P21827	482 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	BET3	P36149	193 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	PGM2	P37012	569 aa	Known RBP	6.29	□□□□□ -1.4
CAF16	YFL028C	ALG14	P38242	237 aa		6.29	□□□□□ -1.4

Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms