RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C TY1B-LR2P0C2I5 1755 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-LR3P0C2I6 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C TY1B-PR1P0C2I9 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C TY1B-PR2P0C2J0 1756 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-PR3P0C2J1 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C TY1B-JR1P47098 1755 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-ML2Q03434 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C TY1B-ER1Q03612 1755 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-ML1Q04711 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C TY1B-GR2Q12269 1755 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-OLQ12273 1755 aa4.62□□□□□ -1.67
CDC40YDR364C TY1B-PLQ12414 1755 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C HSE1P38753 452 aa4.62□□□□□ -1.67
CDC40YDR364C MPT5P39016 859 aaKnown RBP RIP-Chip data4.62□□□□□ -1.67not detected
CDC40YDR364C MON1P53129 644 aa4.62□□□□□ -1.67
CDC40YDR364C ESC1Q03661 1658 aaKnown RBP4.62□□□□□ -1.67
CDC40YDR364C GEA1P47102 1408 aaPredicted RBP4.61□□□□□ -1.67
CDC40YDR364C MET5P47169 1442 aa4.61□□□□□ -1.67
CDC40YDR364C ULS1Q08562 1619 aa4.61□□□□□ -1.67
CDC40YDR364C NTE1Q04958 1679 aa4.61□□□□□ -1.67
CDC40YDR364C GEA2P39993 1459 aaKnown RBP4.61□□□□□ -1.67
CDC40YDR364C AIM26P32858 118 aa4.61□□□□□ -1.67
CDC40YDR364C IPL1P38991 367 aa4.61□□□□□ -1.67
CDC40YDR364C UTP5Q04177 643 aaKnown RBP4.61□□□□□ -1.67
CDC40YDR364C STM1P39015 273 aaKnown RBP4.6□□□□□ -1.67
CDC40YDR364C MEF2P39677 819 aa4.6□□□□□ -1.67
CDC40YDR364C RSC58Q07979 502 aa4.6□□□□□ -1.67
CDC40YDR364C LAP2Q10740 671 aa4.6□□□□□ -1.67
CDC40YDR364C RPA190P10964 1664 aaKnown RBP4.59□□□□□ -1.67
CDC40YDR364C ASF1P32447 279 aa4.59□□□□□ -1.67
CDC40YDR364C LAM1P38851 1228 aa4.59□□□□□ -1.67
CDC40YDR364C SGD1Q06132 899 aa4.59□□□□□ -1.67
CDC40YDR364C UBP3Q01477 912 aaKnown RBP RIP-Chip data4.58□□□□□ -1.68 RIP-Chip
CDC40YDR364C GCN5Q03330 439 aa4.58□□□□□ -1.68
CDC40YDR364C PUS9Q12069 462 aa4.58□□□□□ -1.68
CDC40YDR364C YBL113CQ7M4S9 792 aa4.58□□□□□ -1.68
CDC40YDR364C VPS15P22219 1454 aa4.58□□□□□ -1.68
CDC40YDR364C MLP2P40457 1679 aa4.57□□□□□ -1.68
CDC40YDR364C SPS1P08458 490 aa4.57□□□□□ -1.68
CDC40YDR364C SEC20P28791 383 aa4.57□□□□□ -1.68
CDC40YDR364C YSC84P32793 468 aa4.57□□□□□ -1.68
CDC40YDR364C TRM2P33753 639 aa4.57□□□□□ -1.68
CDC40YDR364C QNS1P38795 714 aaKnown RBP4.57□□□□□ -1.68
CDC40YDR364C XKS1P42826 600 aa4.57□□□□□ -1.68
CDC40YDR364C YJL045WP47052 634 aa4.57□□□□□ -1.68
CDC40YDR364C HNT2P49775 206 aa4.57□□□□□ -1.68
CDC40YDR364C SPT20P50875 604 aa4.57□□□□□ -1.68
CDC40YDR364C YCS4Q06156 1176 aa4.57□□□□□ -1.68
CDC40YDR364C YOR352WQ08816 343 aa4.57□□□□□ -1.68
CDC40YDR364C IKI3Q06706 1349 aaKnown RBP4.57□□□□□ -1.68
CDC40YDR364C TRL1P09880 827 aaKnown RBP4.56□□□□□ -1.68
CDC40YDR364C VMA4P22203 233 aaKnown RBP4.56□□□□□ -1.68
CDC40YDR364C NOC3Q07896 663 aaPredicted RBP4.56□□□□□ -1.68
CDC40YDR364C NBA1Q08229 501 aaKnown RBP4.56□□□□□ -1.68
CDC40YDR364C CAT8P39113 1433 aa4.55□□□□□ -1.68
CDC40YDR364C MSH3P25336 1018 aa4.55□□□□□ -1.68
CDC40YDR364C DOM34P33309 386 aa4.55□□□□□ -1.68
CDC40YDR364C GPI13Q07830 1017 aa4.55□□□□□ -1.68
CDC40YDR364C RPO21P04050 1733 aaKnown RBP4.55□□□□□ -1.68
CDC40YDR364C TY3B-GQ99315 1547 aa4.55□□□□□ -1.68
CDC40YDR364C IRC20Q06554 1556 aa4.55□□□□□ -1.68
CDC40YDR364C LTE1P07866 1435 aa4.55□□□□□ -1.68
CDC40YDR364C ERP5P38819 212 aa4.54□□□□□ -1.68
CDC40YDR364C THI12P42883 340 aa4.54□□□□□ -1.68
CDC40YDR364C THI5P43534 340 aa4.54□□□□□ -1.68
CDC40YDR364C THI11P47183 340 aa4.54□□□□□ -1.68
CDC40YDR364C SAM37P50110 327 aa4.54□□□□□ -1.68
CDC40YDR364C THI13Q07748 340 aa4.54□□□□□ -1.68
CDC40YDR364C PDR12Q02785 1511 aa4.54□□□□□ -1.68
CDC40YDR364C TY1B-JR2P47100 1755 aaKnown RBP4.54□□□□□ -1.68
CDC40YDR364C TY1B-ER2Q03619 1755 aa4.54□□□□□ -1.68
CDC40YDR364C TY1B-MR1Q04214 1755 aa4.54□□□□□ -1.68
CDC40YDR364C TY1B-MR2Q04670 1755 aaKnown RBP4.54□□□□□ -1.68
CDC40YDR364C TY1B-LR1Q12088 1755 aaKnown RBP4.54□□□□□ -1.68
CDC40YDR364C TY1B-NL1Q12112 1755 aa4.54□□□□□ -1.68
CDC40YDR364C TY1B-GR1Q12141 1755 aa4.54□□□□□ -1.68
CDC40YDR364C TY1B-BLQ12490 1755 aa4.54□□□□□ -1.68
CDC40YDR364C ATG14P38270 344 aa4.53□□□□□ -1.68
CDC40YDR364C VPS53P47061 822 aa4.53□□□□□ -1.68
CDC40YDR364C SLI1P53304 468 aa4.53□□□□□ -1.68
CDC40YDR364C RKM2Q03942 479 aa4.53□□□□□ -1.68
CDC40YDR364C DUS4Q06063 367 aa4.53□□□□□ -1.68
CDC40YDR364C MSC6Q08818 692 aaKnown RBP4.53□□□□□ -1.68
CDC40YDR364C NUP157P40064 1391 aaKnown RBP4.53□□□□□ -1.68
CDC40YDR364C NUP170P38181 1502 aa4.53□□□□□ -1.68
CDC40YDR364C GDB1Q06625 1536 aa4.53□□□□□ -1.68
CDC40YDR364C GRS1P38088 690 aaKnown RBP4.53□□□□□ -1.69
CDC40YDR364C BRN1P38170 754 aa4.53□□□□□ -1.69
CDC40YDR364C SEC26P41810 973 aaKnown RBP4.53□□□□□ -1.69
CDC40YDR364C POL32P47110 350 aa4.53□□□□□ -1.69
CDC40YDR364C MSE1P48525 536 aa4.53□□□□□ -1.69
CDC40YDR364C YNR063WP53749 607 aa4.53□□□□□ -1.69
CDC40YDR364C RCL1Q08096 367 aaPredicted RBP4.53□□□□□ -1.69
CDC40YDR364C PDR10P51533 1564 aa4.52□□□□□ -1.69
CDC40YDR364C PUF4P25339 888 aaKnown RBP RIP-Chip data4.52□□□□□ -1.69not detected
CDC40YDR364C BAP2P38084 609 aa4.52□□□□□ -1.69
CDC40YDR364C YHL050CP38721 697 aa4.52□□□□□ -1.69
CDC40YDR364C YHR219WP38900 624 aa4.52□□□□□ -1.69
CDC40YDR364C PEX13P80667 386 aa4.52□□□□□ -1.69
CDC40YDR364C BNI1P41832 1953 aa4.51□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 15 ms