RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YEN1	P40028	759 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	TPO2	P53283	614 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	RTS3	P53289	263 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	7.51	□□□□□ -1.21	not detected
TRP1	YDR007W	YDR444W	Q04093	687 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	YMR074C	Q04773	145 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	AVO1	Q08236	1176 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	GNT1	Q12096	491 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	SLP1	Q12232	587 aa		7.51	□□□□□ -1.21
TRP1	YDR007W	HSE1	P38753	452 aa		7.5	□□□□□ -1.21
TRP1	YDR007W	POL5	P39985	1022 aa	Known RBP	7.5	□□□□□ -1.21
TRP1	YDR007W	UGO1	Q03327	502 aa		7.5	□□□□□ -1.21
TRP1	YDR007W	ALG6	Q12001	544 aa	Known RBP	7.5	□□□□□ -1.21
TRP1	YDR007W	HBN1	Q96VH4	193 aa		7.5	□□□□□ -1.21
TRP1	YDR007W	RPL8A	P17076	256 aa	Known RBP	7.49	□□□□□ -1.21
TRP1	YDR007W	SAC7	P17121	654 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	MET22	P32179	357 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	HBS1	P32769	611 aa	Known RBP	7.49	□□□□□ -1.21
TRP1	YDR007W	GDH3	P39708	457 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	SIP5	P40210	489 aa	Known RBP	7.49	□□□□□ -1.21
TRP1	YDR007W	TED1	P40533	473 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	VPS53	P47061	822 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	SPP382	Q06411	708 aa	Predicted RBP	7.49	□□□□□ -1.21
TRP1	YDR007W	YDR306C	Q06640	478 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	GIC2	Q06648	383 aa		7.49	□□□□□ -1.21
TRP1	YDR007W	TOM70	P07213	617 aa	Known RBP	7.48	□□□□□ -1.21
TRP1	YDR007W	NFS1	P25374	497 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	PEX6	P33760	1030 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	CAB3	P36076	571 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	YIR007W	P40566	764 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	ATG36	P46983	293 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	YNR029C	P53729	429 aa	Known RBP	7.48	□□□□□ -1.21
TRP1	YDR007W	GIS4	Q04233	774 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	ELG1	Q12050	791 aa		7.48	□□□□□ -1.21
TRP1	YDR007W	PDC5	P16467	563 aa	Known RBP	7.47	□□□□□ -1.21
TRP1	YDR007W	NAR1	P23503	491 aa	Known RBP	7.47	□□□□□ -1.21
TRP1	YDR007W	AAR2	P32357	355 aa	Predicted RBP	7.47	□□□□□ -1.21
TRP1	YDR007W	YBR284W	P38150	797 aa		7.47	□□□□□ -1.21
TRP1	YDR007W	ZDS1	P50111	915 aa	Known RBP	7.47	□□□□□ -1.21
TRP1	YDR007W	YGR045C	P53229	120 aa		7.47	□□□□□ -1.21
TRP1	YDR007W	TFB2	Q02939	513 aa		7.47	□□□□□ -1.21
TRP1	YDR007W	SKI3	P17883	1432 aa	Known RBP	7.46	□□□□□ -1.21
TRP1	YDR007W	KNS1	P32350	737 aa	Predicted RBP	7.46	□□□□□ -1.22
TRP1	YDR007W	DOM34	P33309	386 aa		7.46	□□□□□ -1.22
TRP1	YDR007W	ACO2	P39533	789 aa		7.46	□□□□□ -1.22
TRP1	YDR007W	HLJ1	P48353	224 aa		7.46	□□□□□ -1.22
TRP1	YDR007W	SPA2	P23201	1466 aa	Known RBP	7.46	□□□□□ -1.22
TRP1	YDR007W	TY4B-P	A0A0B7P3V8	1104 aa		7.45	□□□□□ -1.22
TRP1	YDR007W	TOP3	P13099	656 aa		7.45	□□□□□ -1.22
TRP1	YDR007W	MAE1	P36013	669 aa	Known RBP	7.45	□□□□□ -1.22
TRP1	YDR007W	ALG14	P38242	237 aa		7.45	□□□□□ -1.22
TRP1	YDR007W	QNS1	P38795	714 aa	Known RBP	7.45	□□□□□ -1.22
TRP1	YDR007W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	7.45	□□□□□ -1.22	not detected
TRP1	YDR007W	ELA1	P53861	379 aa	Predicted RBP	7.45	□□□□□ -1.22
TRP1	YDR007W	YPL260W	Q08977	551 aa		7.45	□□□□□ -1.22
TRP1	YDR007W	TY4A-H	Q6Q5P6	413 aa		7.45	□□□□□ -1.22
TRP1	YDR007W	SGS1	P35187	1447 aa		7.44	□□□□□ -1.22
TRP1	YDR007W	GPM1	P00950	247 aa	Known RBP	7.44	□□□□□ -1.22
TRP1	YDR007W	TOP1	P04786	769 aa		7.44	□□□□□ -1.22
TRP1	YDR007W	ERS1	P17261	260 aa		7.44	□□□□□ -1.22
TRP1	YDR007W	PGM2	P37012	569 aa	Known RBP	7.44	□□□□□ -1.22
TRP1	YDR007W	MAL11	P53048	616 aa		7.44	□□□□□ -1.22
TRP1	YDR007W	PPH3	P32345	308 aa		7.43	□□□□□ -1.22
TRP1	YDR007W	EBP2	P36049	427 aa	Known RBP	7.43	□□□□□ -1.22
TRP1	YDR007W	CAF120	P53836	1060 aa		7.43	□□□□□ -1.22
TRP1	YDR007W	RSA3	Q05942	220 aa	Known RBP	7.43	□□□□□ -1.22
TRP1	YDR007W	DUS3	Q06053	668 aa	Known RBP	7.43	□□□□□ -1.22
TRP1	YDR007W	SPO21	Q12411	609 aa		7.43	□□□□□ -1.22
TRP1	YDR007W	YER152C	P10356	443 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	KIP1	P28742	1111 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	PNT1	P38969	423 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	UBP6	P43593	499 aa	Known RBP	7.42	□□□□□ -1.22
TRP1	YDR007W	ATG13	Q06628	738 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	YOR223W	Q12015	292 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	YPR071W	Q12346	211 aa		7.42	□□□□□ -1.22
TRP1	YDR007W	ADE8	P04161	214 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	RPL11A	P0C0W9	174 aa	Known RBP	7.41	□□□□□ -1.22
TRP1	YDR007W	RET1	P22276	1149 aa	Known RBP	7.41	□□□□□ -1.22
TRP1	YDR007W	PET10	P36139	283 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	DSS1	P39112	969 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	DSE4	P53753	1117 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	RPL11B	Q3E757	174 aa	Predicted RBP	7.41	□□□□□ -1.22
TRP1	YDR007W	MDM12	Q92328	271 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	NHA1	Q99271	985 aa		7.41	□□□□□ -1.22
TRP1	YDR007W	MSD1	P15179	658 aa	Known RBP	7.4	□□□□□ -1.22
TRP1	YDR007W	SIT1	P39980	628 aa		7.4	□□□□□ -1.22
TRP1	YDR007W	KIP3	P53086	805 aa	Known RBP	7.4	□□□□□ -1.22
TRP1	YDR007W	YNL193W	P53870	558 aa		7.4	□□□□□ -1.22
TRP1	YDR007W	SRP1	Q02821	542 aa	Known RBP	7.4	□□□□□ -1.22
TRP1	YDR007W	DOT1	Q04089	582 aa	Known RBP	7.4	□□□□□ -1.22
TRP1	YDR007W	INO80	P53115	1489 aa		7.4	□□□□□ -1.22
TRP1	YDR007W	RAD53	P22216	821 aa		7.39	□□□□□ -1.23
TRP1	YDR007W	GSY1	P23337	708 aa		7.39	□□□□□ -1.23
TRP1	YDR007W	NNK1	P36003	928 aa		7.39	□□□□□ -1.23
TRP1	YDR007W	YRO2	P38079	344 aa		7.39	□□□□□ -1.23
TRP1	YDR007W	PMT3	P47190	753 aa		7.39	□□□□□ -1.23
TRP1	YDR007W	YLR257W	Q06146	321 aa	Known RBP	7.39	□□□□□ -1.23
TRP1	YDR007W	DBP2	P24783	546 aa	Known RBP	7.38	□□□□□ -1.23
TRP1	YDR007W	GPB2	P39717	880 aa		7.38	□□□□□ -1.23
TRP1	YDR007W	NUG1	P40010	520 aa	Known RBP	7.38	□□□□□ -1.23

Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms