RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 UBAP1LF5GYI3 381 aa8.55□□□□□ -1.04
SMAD4-208ENST00000589706 ZBTB7BO15156 539 aaPredicted RBP8.55□□□□□ -1.04
SMAD4-208ENST00000589706 GIGYF1O75420 1035 aaPredicted RBP8.55□□□□□ -1.04
SMAD4-208ENST00000589706 MLECQ14165 292 aa8.55□□□□□ -1.04
SMAD4-208ENST00000589706 BPHLQ86WA6 291 aaPredicted RBP8.55□□□□□ -1.04
SMAD4-208ENST00000589706 BAP1Q92560 729 aa8.55□□□□□ -1.04
SMAD4-208ENST00000589706 KCTD12Q96CX2 325 aaKnown RBP8.55□□□□□ -1.04
SMAD4-208ENST00000589706 MYT1LQ9UL68 1186 aa8.55□□□□□ -1.04
SMAD4-208ENST00000589706 FRMPD1Q5SYB0 1578 aa8.55□□□□□ -1.04
SMAD4-208ENST00000589706 PTPRTO14522 1441 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 KIF27Q86VH2 1401 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 PREX1Q8TCU6 1659 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 E9PSI1 815 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 AGERQ15109 404 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 ERFEQ4G0M1 354 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 OXLD1Q5BKU9 147 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 RNF20Q5VTR2 975 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 SIX5Q8N196 739 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 IL21Q9HBE4 155 aa8.54□□□□□ -1.04
SMAD4-208ENST00000589706 DKK1O94907 266 aa8.53□□□□□ -1.04
SMAD4-208ENST00000589706 CEBPAP49715 358 aaPredicted RBP8.53□□□□□ -1.04
SMAD4-208ENST00000589706 ZNF516Q92618 1163 aa8.53□□□□□ -1.04
SMAD4-208ENST00000589706 FOXJ1Q92949 421 aa8.53□□□□□ -1.04
SMAD4-208ENST00000589706 KIAA1024Q9UPX6 916 aa8.53□□□□□ -1.04
SMAD4-208ENST00000589706 UGGT2Q9NYU1 1516 aa8.53□□□□□ -1.04
SMAD4-208ENST00000589706 MED1Q15648 1581 aaPredicted RBP8.52□□□□□ -1.04
SMAD4-208ENST00000589706 FANCAO15360 1455 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 NEO1Q92859 1461 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 KIAA0556O60303 1618 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 SOWAHDA6NJG2 315 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 GTF2IP78347 998 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 LINC01559Q495D7 138 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 TJAP1Q5JTD0 557 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 ZNF511Q8NB15 262 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 C1orf216Q8TAB5 229 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 SLC10A4Q96EP9 437 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 RBM19Q9Y4C8 960 aaKnown RBP8.52□□□□□ -1.05
SMAD4-208ENST00000589706 TTC37Q6PGP7 1564 aa8.52□□□□□ -1.05
SMAD4-208ENST00000589706 ARHGEF40Q8TER5 1519 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 SERPINB4P48594 390 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 SEC13P55735 322 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 C4orf48Q5BLP8 95 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 CCDC102BQ68D86 513 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 SIRT1Q96EB6 747 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 PCGF6Q9BYE7 350 aa8.51□□□□□ -1.05
SMAD4-208ENST00000589706 FER1L4A9Z1Z3 1794 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 ABCA8O94911 1581 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 HSPA1LP34931 641 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 ANP32EQ9BTT0 268 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 SIGLEC1Q9BZZ2 1709 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 ABCA9Q8IUA7 1624 aa8.5□□□□□ -1.05
SMAD4-208ENST00000589706 UHRF1BP1Q6BDS2 1440 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 AKNAQ7Z591 1439 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 SCNN1AP37088 669 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 USP4Q13107 963 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 NBPF20Q3BBV1 942 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 TPCN2Q8NHX9 752 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 C1QTNF2Q9BXJ5 285 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 FCF1Q9Y324 198 aaKnown RBP8.49□□□□□ -1.05
SMAD4-208ENST00000589706 PCDHGA11Q9Y5H2 935 aa8.49□□□□□ -1.05
SMAD4-208ENST00000589706 POTEMA6NI47 508 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 SFI1A8K8P3 1242 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 ESPNB1AK53 854 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 PRMT3O60678 531 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 S1PR4O95977 384 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 ERCC3P19447 782 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 PSME1Q06323 249 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 CCDC125Q86Z20 511 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 SEPT12Q8IYM1 358 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 PRIMPOLQ96LW4 560 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 KRTAP3-3Q9BYR6 98 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 KRTAP3-2Q9BYR7 98 aa8.48□□□□□ -1.05
SMAD4-208ENST00000589706 DENND4BO75064 1496 aaPredicted RBP8.47□□□□□ -1.05
SMAD4-208ENST00000589706 PTPN5P54829 565 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 OCLNQ16625 522 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 DNAJC14Q6Y2X3 702 aaPredicted RBP8.47□□□□□ -1.05
SMAD4-208ENST00000589706 TAS1R3Q7RTX0 852 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 NKX2-3Q8TAU0 364 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 CXXC1Q9P0U4 656 aaPredicted RBP8.47□□□□□ -1.05
SMAD4-208ENST00000589706 PCDH10Q9P2E7 1040 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 CDV3Q9UKY7 258 aaKnown RBP8.47□□□□□ -1.05
SMAD4-208ENST00000589706 PCDHB11Q9Y5F2 797 aa8.47□□□□□ -1.05
SMAD4-208ENST00000589706 SETD1BQ9UPS6 1966 aaKnown RBP8.46□□□□□ -1.05
SMAD4-208ENST00000589706 RICTORQ6R327 1708 aa8.46□□□□□ -1.05
SMAD4-208ENST00000589706 SH3BP2P78314 561 aa8.46□□□□□ -1.06
SMAD4-208ENST00000589706 TRMT44Q8IYL2 757 aaKnown RBP8.46□□□□□ -1.06
SMAD4-208ENST00000589706 FHOD3Q2V2M9 1422 aa8.46□□□□□ -1.06
SMAD4-208ENST00000589706 ATP10BO94823 1461 aa8.45□□□□□ -1.06
SMAD4-208ENST00000589706 RBM47A0AV96 593 aaKnown RBP8.45□□□□□ -1.06
SMAD4-208ENST00000589706 HINFPQ9BQA5 517 aa8.45□□□□□ -1.06
SMAD4-208ENST00000589706 BIN2Q9UBW5 565 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-208ENST00000589706 ZNF335Q9H4Z2 1342 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-208ENST00000589706 ZFYVE16Q7Z3T8 1539 aa8.44□□□□□ -1.06
SMAD4-208ENST00000589706 ARHGEF12Q9NZN5 1544 aa8.44□□□□□ -1.06
SMAD4-208ENST00000589706 MARSP56192 900 aaKnown RBP8.44□□□□□ -1.06
SMAD4-208ENST00000589706 PIP4K2BP78356 416 aa8.44□□□□□ -1.06
SMAD4-208ENST00000589706 ABL1P00519 1130 aa8.43□□□□□ -1.06
SMAD4-208ENST00000589706 KCTD15Q96SI1 283 aaPredicted RBP8.43□□□□□ -1.06
SMAD4-208ENST00000589706 EGFL7Q9UHF1 273 aa8.43□□□□□ -1.06
SMAD4-208ENST00000589706 EFCAB5A4FU69 1503 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms