RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TJP1Q07157 1748 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 ERVV-2B6SEH9 535 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 CCDC27Q2M243 656 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 C1orf141Q5JVX7 400 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 PIGBQ92521 554 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 SLC52A2Q9HAB3 445 aa12.28□□□□□ -0.44
VPS35-211ENST00000569950 C5P01031 1676 aa12.27□□□□□ -0.45
VPS35-211ENST00000569950 TRIM37O94972 964 aa12.27□□□□□ -0.45
VPS35-211ENST00000569950 HSP90AB1P08238 724 aaKnown RBP12.27□□□□□ -0.45
VPS35-211ENST00000569950 NEUROD2Q15784 382 aa12.27□□□□□ -0.45
VPS35-211ENST00000569950 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.45
VPS35-211ENST00000569950 COL5A3P25940 1745 aaPredicted RBP12.27□□□□□ -0.45
VPS35-211ENST00000569950 NUP188Q5SRE5 1749 aa12.26□□□□□ -0.45
VPS35-211ENST00000569950 ZNF853P0CG23 659 aa12.26□□□□□ -0.45
VPS35-211ENST00000569950 MAPK8IP2Q13387 824 aaPredicted RBP12.26□□□□□ -0.45
VPS35-211ENST00000569950 WWC1Q8IX03 1113 aa12.26□□□□□ -0.45
VPS35-211ENST00000569950 NFATC2IPQ8NCF5 419 aa12.26□□□□□ -0.45
VPS35-211ENST00000569950 UPF1Q92900 1129 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS35-211ENST00000569950 SPINK5Q9NQ38 1064 aaPredicted RBP12.26□□□□□ -0.45
VPS35-211ENST00000569950 SLC4A9Q96Q91 983 aa12.25□□□□□ -0.45
VPS35-211ENST00000569950 ATG3Q9NT62 314 aa12.25□□□□□ -0.45
VPS35-211ENST00000569950 MYH14Q7Z406 1995 aaKnown RBP12.25□□□□□ -0.45
VPS35-211ENST00000569950 KCNQ3O43525 872 aa12.24□□□□□ -0.45
VPS35-211ENST00000569950 PROM2Q8N271 834 aa12.24□□□□□ -0.45
VPS35-211ENST00000569950 ASAP1Q9ULH1 1129 aa12.24□□□□□ -0.45
VPS35-211ENST00000569950 HEG1Q9ULI3 1381 aa12.24□□□□□ -0.45
VPS35-211ENST00000569950 TUBGCP6Q96RT7 1819 aa12.23□□□□□ -0.45
VPS35-211ENST00000569950 CHL1O00533 1208 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 NEFMP07197 916 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 CABP4P57796 275 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 SLC39A6Q13433 755 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 CAMKK2Q96RR4 588 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 TMOD3Q9NYL9 352 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 MIS18AQ9NYP9 233 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 LAMB4A4D0S4 1761 aa12.22□□□□□ -0.45
VPS35-211ENST00000569950 PALLDQ8WX93 1383 aa12.21□□□□□ -0.45
VPS35-211ENST00000569950 LMOD3Q0VAK6 560 aa12.21□□□□□ -0.45
VPS35-211ENST00000569950 SYTL4Q96C24 671 aaPredicted RBP12.21□□□□□ -0.45
VPS35-211ENST00000569950 LRRC4BQ9NT99 713 aa12.21□□□□□ -0.45
VPS35-211ENST00000569950 SALL2Q9Y467 1007 aaPredicted RBP12.21□□□□□ -0.45
VPS35-211ENST00000569950 PLSCR1O15162 318 aa12.2□□□□□ -0.46
VPS35-211ENST00000569950 TAF7Q15545 349 aaPredicted RBP12.2□□□□□ -0.46
VPS35-211ENST00000569950 DEFB132Q7Z7B7 95 aa12.2□□□□□ -0.46
VPS35-211ENST00000569950 NGEFQ8N5V2 710 aa12.2□□□□□ -0.46
VPS35-211ENST00000569950 RTF1Q92541 710 aaKnown RBP12.2□□□□□ -0.46
VPS35-211ENST00000569950 UBR3Q6ZT12 1888 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 IL16Q14005 1332 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 TEFQ10587 303 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 ITPK1Q13572 414 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 WDR63Q8IWG1 891 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 TRMT2AQ8IZ69 625 aaKnown RBP12.19□□□□□ -0.46
VPS35-211ENST00000569950 ZNF496Q96IT1 587 aaPredicted RBP12.19□□□□□ -0.46
VPS35-211ENST00000569950 CFAP44Q96MT7 982 aa12.19□□□□□ -0.46
VPS35-211ENST00000569950 C4BP0C0L5 1744 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 APBA3O96018 575 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 KCNQ4P56696 695 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 EIF4A1P60842 406 aaKnown RBP12.18□□□□□ -0.46
VPS35-211ENST00000569950 EN1Q05925 392 aaPredicted RBP12.18□□□□□ -0.46
VPS35-211ENST00000569950 KRT24Q2M2I5 525 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 CDCA7LQ96GN5 454 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 MBIPQ9NS73 344 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 IFT57Q9NWB7 429 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 BABAM1Q9NWV8 329 aa12.18□□□□□ -0.46
VPS35-211ENST00000569950 ZBED9Q6R2W3 1325 aa12.17□□□□□ -0.46
VPS35-211ENST00000569950 PRAMEF22A3QJZ6 481 aa12.17□□□□□ -0.46
VPS35-211ENST00000569950 BTBD11A6QL63 1104 aa12.17□□□□□ -0.46
VPS35-211ENST00000569950 HNRNPUQ00839 825 aaKnown RBP eCLIP12.17□□□□□ -0.46
VPS35-211ENST00000569950 EZH2Q15910 746 aaKnown RBP12.17□□□□□ -0.46
VPS35-211ENST00000569950 CCDC125Q86Z20 511 aa12.17□□□□□ -0.46
VPS35-211ENST00000569950 QSER1Q2KHR3 1735 aa12.17□□□□□ -0.46
VPS35-211ENST00000569950 FANCIQ9NVI1 1328 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 LOC102724428A0A0B4J2F2 783 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 SIK1P57059 783 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 SLFN5Q08AF3 891 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 TXNRD1Q16881 649 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 AMIGO3Q86WK7 504 aa12.16□□□□□ -0.46
VPS35-211ENST00000569950 TSR2Q969E8 191 aaKnown RBP12.16□□□□□ -0.46
VPS35-211ENST00000569950 PTCD1O75127 700 aaKnown RBP12.15□□□□□ -0.46
VPS35-211ENST00000569950 GNAI1P63096 354 aa12.15□□□□□ -0.46
VPS35-211ENST00000569950 LINC00116Q8NCU8 138 aa12.15□□□□□ -0.46
VPS35-211ENST00000569950 SMARCC1Q92922 1105 aaPredicted RBP12.15□□□□□ -0.46
VPS35-211ENST00000569950 C4AP0C0L4 1744 aa12.14□□□□□ -0.47
VPS35-211ENST00000569950 SOCS7O14512 581 aa12.14□□□□□ -0.47
VPS35-211ENST00000569950 GIGYF1O75420 1035 aaPredicted RBP12.14□□□□□ -0.47
VPS35-211ENST00000569950 DUSP27Q5VZP5 1158 aa12.14□□□□□ -0.47
VPS35-211ENST00000569950 C8orf58Q8NAV2 365 aa12.14□□□□□ -0.47
VPS35-211ENST00000569950 ANO8Q9HCE9 1232 aaPredicted RBP12.14□□□□□ -0.47
VPS35-211ENST00000569950 TSPYL4Q9UJ04 414 aa12.14□□□□□ -0.47
VPS35-211ENST00000569950 GOLGA2Q08379 1002 aa12.13□□□□□ -0.47
VPS35-211ENST00000569950 DNAJC10Q8IXB1 793 aa12.13□□□□□ -0.47
VPS35-211ENST00000569950 VSIG10Q8N0Z9 540 aa12.13□□□□□ -0.47
VPS35-211ENST00000569950 TSPYL6Q8N831 410 aa12.13□□□□□ -0.47
VPS35-211ENST00000569950 CYP19A1P11511 503 aaPredicted RBP12.12□□□□□ -0.47
VPS35-211ENST00000569950 BAG6P46379 1132 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 CALD1Q05682 793 aaKnown RBP12.12□□□□□ -0.47
VPS35-211ENST00000569950 ZNF827Q17R98 1081 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 SLC27A3Q5K4L6 730 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 LRP10Q7Z4F1 713 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 FMNL2Q96PY5 1086 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms