RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 NISCHQ9Y2I1 1504 aa22.5■■□□□ 1.19
VPS35-211ENST00000569950 CCDC180Q9P1Z9 1646 aa19.91■□□□□ 0.78
VPS35-211ENST00000569950 ABCC9O60706 1549 aa19.15■□□□□ 0.66
VPS35-211ENST00000569950 ZCCHC6Q5VYS8 1495 aaKnown RBP18.82■□□□□ 0.6
VPS35-211ENST00000569950 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.58
VPS35-211ENST00000569950 MYO15BQ96JP2 1530 aa18.62■□□□□ 0.57
VPS35-211ENST00000569950 NACADO15069 1562 aa18.59■□□□□ 0.57
VPS35-211ENST00000569950 RB1CC1Q8TDY2 1594 aa18.53■□□□□ 0.56
VPS35-211ENST00000569950 DCAF8L2P0C7V8 631 aa18.45■□□□□ 0.54
VPS35-211ENST00000569950 UNC13AQ9UPW8 1703 aa18.29■□□□□ 0.52
VPS35-211ENST00000569950 SCRIBQ14160 1630 aa18.15■□□□□ 0.5
VPS35-211ENST00000569950 BICRAQ9NZM4 1560 aa18.12■□□□□ 0.49
VPS35-211ENST00000569950 AEBP2Q6ZN18 517 aaPredicted RBP18.03■□□□□ 0.48
VPS35-211ENST00000569950 PABPN1Q86U42 306 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS35-211ENST00000569950 SHROOM4Q9ULL8 1493 aa17.82■□□□□ 0.44
VPS35-211ENST00000569950 CECR2Q9BXF3 1484 aa17.53■□□□□ 0.4
VPS35-211ENST00000569950 EIF4G1Q04637 1599 aaKnown RBP17.53■□□□□ 0.4
VPS35-211ENST00000569950 DNAJC5BQ9UF47 199 aa17.43■□□□□ 0.38
VPS35-211ENST00000569950 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
VPS35-211ENST00000569950 CC2D2AQ9P2K1 1620 aa17.39■□□□□ 0.38
VPS35-211ENST00000569950 MROH2BQ7Z745 1585 aa17.37■□□□□ 0.37
VPS35-211ENST00000569950 BAZ1AQ9NRL2 1556 aaPredicted RBP17.37■□□□□ 0.37
VPS35-211ENST00000569950 PEG3Q9GZU2 1588 aa17.28■□□□□ 0.36
VPS35-211ENST00000569950 RSF1Q96T23 1441 aaPredicted RBP17.23■□□□□ 0.35
VPS35-211ENST00000569950 ATAD2BQ9ULI0 1458 aa17.23■□□□□ 0.35
VPS35-211ENST00000569950 WIZO95785 1651 aa17.2■□□□□ 0.34
VPS35-211ENST00000569950 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
VPS35-211ENST00000569950 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
VPS35-211ENST00000569950 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
VPS35-211ENST00000569950 HMGXB3Q12766 1538 aa17.13■□□□□ 0.33
VPS35-211ENST00000569950 BAZ1BQ9UIG0 1483 aaKnown RBP17.04■□□□□ 0.32
VPS35-211ENST00000569950 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
VPS35-211ENST00000569950 SUPT5HO00267 1087 aaKnown RBP16.83■□□□□ 0.28
VPS35-211ENST00000569950 CCDC88BA6NC98 1476 aa16.79■□□□□ 0.28
VPS35-211ENST00000569950 NESP48681 1621 aa16.71■□□□□ 0.27
VPS35-211ENST00000569950 LAMC3Q9Y6N6 1575 aa16.66■□□□□ 0.26
VPS35-211ENST00000569950 CFTRP13569 1480 aa16.65■□□□□ 0.26
VPS35-211ENST00000569950 CADPSQ9ULU8 1353 aa16.64■□□□□ 0.26
VPS35-211ENST00000569950 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
VPS35-211ENST00000569950 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
VPS35-211ENST00000569950 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
VPS35-211ENST00000569950 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
VPS35-211ENST00000569950 THOC2Q8NI27 1593 aaKnown RBP16.45■□□□□ 0.22
VPS35-211ENST00000569950 ERCC6Q03468 1493 aa16.39■□□□□ 0.21
VPS35-211ENST00000569950 CEP164Q9UPV0 1460 aa16.39■□□□□ 0.21
VPS35-211ENST00000569950 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
VPS35-211ENST00000569950 MRC2Q9UBG0 1479 aa16.34■□□□□ 0.21
VPS35-211ENST00000569950 WDR62O43379 1518 aa16.34■□□□□ 0.21
VPS35-211ENST00000569950 ABCC8Q09428 1581 aa16.28■□□□□ 0.2
VPS35-211ENST00000569950 CUX1P39880 1505 aa16.28■□□□□ 0.2
VPS35-211ENST00000569950 DNMBPQ6XZF7 1577 aa16.26■□□□□ 0.19
VPS35-211ENST00000569950 TOPBP1Q92547 1522 aa16.26■□□□□ 0.19
VPS35-211ENST00000569950 SYNJ1O43426 1573 aa16.23■□□□□ 0.19
VPS35-211ENST00000569950 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
VPS35-211ENST00000569950 CUX2O14529 1486 aa16.2■□□□□ 0.18
VPS35-211ENST00000569950 TOP2BQ02880 1626 aa16.19■□□□□ 0.18
VPS35-211ENST00000569950 WRNQ14191 1432 aaPredicted RBP eCLIP16.18■□□□□ 0.18
VPS35-211ENST00000569950 POLA1P09884 1462 aaPredicted RBP16.15■□□□□ 0.18
VPS35-211ENST00000569950 TARBP1Q13395 1621 aaKnown RBP16.14■□□□□ 0.17
VPS35-211ENST00000569950 FGD5Q6ZNL6 1462 aa16.13■□□□□ 0.17
VPS35-211ENST00000569950 WDR97A6NE52 1622 aa16.09■□□□□ 0.17
VPS35-211ENST00000569950 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
VPS35-211ENST00000569950 IFT140Q96RY7 1462 aa16.04■□□□□ 0.16
VPS35-211ENST00000569950 ZNF608Q9ULD9 1512 aaPredicted RBP16.03■□□□□ 0.16
VPS35-211ENST00000569950 SOGA1O94964 1423 aa16.01■□□□□ 0.15
VPS35-211ENST00000569950 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
VPS35-211ENST00000569950 EIF4G3O43432 1585 aaKnown RBP15.97■□□□□ 0.15
VPS35-211ENST00000569950 ABCA5Q8WWZ7 1642 aa15.97■□□□□ 0.15
VPS35-211ENST00000569950 AQRO60306 1485 aaKnown RBP eCLIP15.92■□□□□ 0.142e-7■■■■■ 29
VPS35-211ENST00000569950 TDRD9Q8NDG6 1382 aaKnown RBP15.91■□□□□ 0.14
VPS35-211ENST00000569950 PBRM1Q86U86 1689 aa15.89■□□□□ 0.13
VPS35-211ENST00000569950 RUSC2Q8N2Y8 1516 aa15.86■□□□□ 0.13
VPS35-211ENST00000569950 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
VPS35-211ENST00000569950 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
VPS35-211ENST00000569950 GRIN2BQ13224 1484 aa15.8■□□□□ 0.12
VPS35-211ENST00000569950 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
VPS35-211ENST00000569950 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
VPS35-211ENST00000569950 KIF27Q86VH2 1401 aa15.77■□□□□ 0.12
VPS35-211ENST00000569950 ADAMTS12P58397 1594 aa15.77■□□□□ 0.11
VPS35-211ENST00000569950 IGF1RP08069 1367 aa15.75■□□□□ 0.11
VPS35-211ENST00000569950 MAGI1Q96QZ7 1491 aaPredicted RBP15.75■□□□□ 0.11
VPS35-211ENST00000569950 CHD1O14646 1710 aa15.74■□□□□ 0.11
VPS35-211ENST00000569950 CUL7Q14999 1698 aa15.7■□□□□ 0.1
VPS35-211ENST00000569950 SYNJ2O15056 1496 aa15.69■□□□□ 0.1
VPS35-211ENST00000569950 FHAD1B1AJZ9 1412 aa15.67■□□□□ 0.1
VPS35-211ENST00000569950 PRXQ9BXM0 1461 aa15.65■□□□□ 0.1
VPS35-211ENST00000569950 EEA1Q15075 1411 aa15.64■□□□□ 0.09
VPS35-211ENST00000569950 GRIN2AQ12879 1464 aa15.64■□□□□ 0.09
VPS35-211ENST00000569950 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
VPS35-211ENST00000569950 CARMIL1Q5VZK9 1371 aa15.61■□□□□ 0.09
VPS35-211ENST00000569950 NUP160Q12769 1436 aa15.59■□□□□ 0.09
VPS35-211ENST00000569950 CLASP1Q7Z460 1538 aa15.58■□□□□ 0.09
VPS35-211ENST00000569950 CSRNP3Q8WYN3 585 aa15.57■□□□□ 0.08
VPS35-211ENST00000569950 KIF21BO75037 1637 aa15.57■□□□□ 0.08
VPS35-211ENST00000569950 RAPGEF2Q9Y4G8 1499 aa15.56■□□□□ 0.08
VPS35-211ENST00000569950 FAM9AQ8IZU1 332 aaPredicted RBP15.54■□□□□ 0.08
VPS35-211ENST00000569950 CHMP7Q8WUX9 453 aaPredicted RBP15.54■□□□□ 0.08
VPS35-211ENST00000569950 FBLN2P98095 1184 aa15.52■□□□□ 0.08
VPS35-211ENST00000569950 SHROOM2Q13796 1616 aa15.5■□□□□ 0.07
VPS35-211ENST00000569950 OSCARQ8IYS5 282 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms