RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PDE4CQ08493 712 aa19.4■□□□□ 0.7
CCDC88B-209ENST00000494080 KIF1BPQ96EK5 621 aa19.4■□□□□ 0.7
CCDC88B-209ENST00000494080 PTPRCP08575 1304 aa19.4■□□□□ 0.7
CCDC88B-209ENST00000494080 KDM4AO75164 1064 aa19.39■□□□□ 0.7
CCDC88B-209ENST00000494080 VAMP4O75379 141 aa19.39■□□□□ 0.7
CCDC88B-209ENST00000494080 PI4KAP2A4QPH2 592 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 OFD1O75665 1012 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 KCNA6P17658 529 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 PI4KAP1Q8N8J0 262 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 NPC1L1Q9UHC9 1359 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 CCDC112Q8NEF3 446 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 ABCC1P33527 1531 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 CNNM1Q9NRU3 951 aa19.39■□□□□ 0.69
CCDC88B-209ENST00000494080 HIP1O00291 1037 aa19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 STK3Q13188 491 aa19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 MTHFSDQ2M296 383 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 WDR33Q9C0J8 1336 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 DBF4Q9UBU7 674 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 HDAC1Q13547 482 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 TRIM29Q14134 588 aa19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 ZSCAN23Q3MJ62 389 aa19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 TBC1D9Q6ZT07 1266 aa19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 MRPL50Q8N5N7 158 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-209ENST00000494080 PTPRTO14522 1441 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 USP25Q9UHP3 1055 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 CYP46A1Q9Y6A2 500 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 GPS2Q13227 327 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 TTC21AQ8NDW8 1320 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 ARHGAP45Q92619 1136 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 MYD88Q99836 296 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 ANKRD24Q8TF21 1146 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 ATP10AO60312 1499 aa19.37■□□□□ 0.69
CCDC88B-209ENST00000494080 MCM5P33992 734 aa19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 BMP2KLQ5H9B9 411 aa19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 FKBP4Q02790 459 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 CCDC57Q2TAC2 916 aa19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 MNS1Q8NEH6 495 aa19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 TTC37Q6PGP7 1564 aa19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 BBXQ8WY36 941 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-209ENST00000494080 MEX3CQ5U5Q3 659 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 LARP1Q6PKG0 1096 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 ARGLU1Q9NWB6 273 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 CCDC192P0DO97 292 aa19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 PPP4R3BQ5MIZ7 849 aa19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 JAKMIP1Q96N16 626 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 BOLA2Q9H3K6 86 aa19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 MAP3K19Q56UN5 1328 aa19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 LRRC59Q96AG4 307 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 EYA1Q99502 592 aa19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 CCDC8Q9H0W5 538 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-209ENST00000494080 SPDYE4A6NLX3 237 aa19.34■□□□□ 0.69
CCDC88B-209ENST00000494080 CCDC158Q5M9N0 1113 aa19.34■□□□□ 0.69
CCDC88B-209ENST00000494080 NUCB1Q02818 461 aa19.34■□□□□ 0.69
CCDC88B-209ENST00000494080 CEP126Q9P2H0 1117 aa19.34■□□□□ 0.69
CCDC88B-209ENST00000494080 YEATS2Q9ULM3 1422 aa19.33■□□□□ 0.69
CCDC88B-209ENST00000494080 ZKSCAN5Q9Y2L8 839 aa19.33■□□□□ 0.69
CCDC88B-209ENST00000494080 GLRX3O76003 335 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 TTC39AQ5SRH9 613 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 PPP1R42Q7Z4L9 355 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 MAGI2Q86UL8 1455 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 MYO5CQ9NQX4 1742 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 GDPD2Q9HCC8 539 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 TBC1D2BQ9UPU7 963 aa19.33■□□□□ 0.68
CCDC88B-209ENST00000494080 CLSTN1O94985 981 aa19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 CGNQ9P2M7 1197 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 TRIM35Q9UPQ4 493 aa19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 MAP3K2Q9Y2U5 619 aa19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 UGGT1Q9NYU2 1555 aa19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 CEBPZQ03701 1054 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 JARID2Q92833 1246 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 ERICH4A6NGS2 130 aa19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 C16orf71Q8IYS4 520 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-209ENST00000494080 ERICH2A1L162 156 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 BLOC1S2Q6QNY1 142 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 RAB3GAP1Q15042 981 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 ERCC6L2Q5T890 1561 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 PLA2R1Q13018 1463 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 RAB11FIP3O75154 756 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 PRIM1P49642 420 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 CCDC73Q6ZRK6 1079 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 CHPF2Q9P2E5 772 aa19.31■□□□□ 0.68
CCDC88B-209ENST00000494080 RAD21O60216 631 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 ZBTB40Q9NUA8 1239 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 ZNF830Q96NB3 372 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 NOL10Q9BSC4 688 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 PDCP20941 246 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 SLC39A6Q13433 755 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 ATP5J2-PTCD1G3V325 749 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 SNX21Q969T3 373 aa19.3■□□□□ 0.68
CCDC88B-209ENST00000494080 FLT4P35916 1363 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 RRP12Q5JTH9 1297 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 STK11IPQ8N1F8 1099 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 CASTP20810 708 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 IL13P35225 146 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 CABLES1Q8TDN4 633 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 PIP4K2BP78356 416 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 SMC5Q8IY18 1101 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 HYPKQ9NX55 129 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 A0A087WZG4 1122 aa19.29■□□□□ 0.68
CCDC88B-209ENST00000494080 PDRG1Q9NUG6 133 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 260.1 ms