RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 ANKRD36BQ8N2N9 1353 aa8.72□□□□□ -1.01
VARS-222ENST00000470953 CPSF1Q10570 1443 aaKnown RBP8.71□□□□□ -1.01
VARS-222ENST00000470953 CCDC88AQ3V6T2 1871 aa8.71□□□□□ -1.01
VARS-222ENST00000470953 PLEKHG3A1L390 1219 aa8.71□□□□□ -1.02
VARS-222ENST00000470953 CYP4F22Q6NT55 531 aa8.71□□□□□ -1.02
VARS-222ENST00000470953 PAXIP1Q6ZW49 1069 aaPredicted RBP8.71□□□□□ -1.02
VARS-222ENST00000470953 AOC2O75106 756 aa8.7□□□□□ -1.02
VARS-222ENST00000470953 IL2RBP14784 551 aa8.7□□□□□ -1.02
VARS-222ENST00000470953 LMNB1P20700 586 aa8.7□□□□□ -1.02
VARS-222ENST00000470953 COLQQ9Y215 455 aaPredicted RBP8.7□□□□□ -1.02
VARS-222ENST00000470953 NLRP6P59044 892 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 LDHDQ86WU2 507 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 DDX54Q8TDD1 881 aaKnown RBP8.69□□□□□ -1.02
VARS-222ENST00000470953 AK7Q96M32 723 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 COL25A1Q9BXS0 654 aaPredicted RBP8.69□□□□□ -1.02
VARS-222ENST00000470953 CCDC61Q9Y6R9 512 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 USP47Q96K76 1375 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 UNC80Q8N2C7 3258 aa8.69□□□□□ -1.02
VARS-222ENST00000470953 TRIOBPQ9H2D6 2365 aa8.68□□□□□ -1.02
VARS-222ENST00000470953 ARHGEF25Q86VW2 580 aa8.68□□□□□ -1.02
VARS-222ENST00000470953 C4AP0C0L4 1744 aa8.68□□□□□ -1.02
VARS-222ENST00000470953 SOX12O15370 315 aa8.67□□□□□ -1.02
VARS-222ENST00000470953 CA12O43570 354 aa8.67□□□□□ -1.02
VARS-222ENST00000470953 ECE1P42892 770 aa8.67□□□□□ -1.02
VARS-222ENST00000470953 DPY19L2Q6NUT2 758 aa8.67□□□□□ -1.02
VARS-222ENST00000470953 CCDC87Q9NVE4 849 aa8.67□□□□□ -1.02
VARS-222ENST00000470953 CHRNA5P30532 468 aa8.66□□□□□ -1.02
VARS-222ENST00000470953 DDNO94850 711 aaPredicted RBP8.65□□□□□ -1.02
VARS-222ENST00000470953 SSFA2P28290 1259 aa8.65□□□□□ -1.02
VARS-222ENST00000470953 SPTBN5Q9NRC6 3674 aaKnown RBP8.65□□□□□ -1.02
VARS-222ENST00000470953 ADAMTSL1Q8N6G6 1762 aa8.65□□□□□ -1.02
VARS-222ENST00000470953 VCANP13611 3396 aa8.64□□□□□ -1.03
VARS-222ENST00000470953 NSD3Q9BZ95 1437 aa8.64□□□□□ -1.03
VARS-222ENST00000470953 MAP2K2P36507 400 aa8.64□□□□□ -1.03
VARS-222ENST00000470953 NLRP2Q9NX02 1062 aa8.64□□□□□ -1.03
VARS-222ENST00000470953 HPS5Q9UPZ3 1129 aa8.64□□□□□ -1.03
VARS-222ENST00000470953 NFKBIEO00221 500 aa8.63□□□□□ -1.03
VARS-222ENST00000470953 FMR1Q06787 632 aaKnown RBP eCLIP8.63□□□□□ -1.03
VARS-222ENST00000470953 EAPPQ56P03 285 aaPredicted RBP8.63□□□□□ -1.03
VARS-222ENST00000470953 MAP1SQ66K74 1059 aaPredicted RBP8.63□□□□□ -1.03
VARS-222ENST00000470953 MPHOSPH9Q99550 1183 aa8.63□□□□□ -1.03
VARS-222ENST00000470953 TAF1DQ9H5J8 278 aaPredicted RBP8.63□□□□□ -1.03
VARS-222ENST00000470953 PRDM6Q9NQX0 595 aa8.63□□□□□ -1.03
VARS-222ENST00000470953 PALLDQ8WX93 1383 aa8.62□□□□□ -1.03
VARS-222ENST00000470953 BRPF1P55201 1214 aaPredicted RBP8.62□□□□□ -1.03
VARS-222ENST00000470953 CNTROBQ8N137 903 aa8.62□□□□□ -1.03
VARS-222ENST00000470953 CLEC11AQ9Y240 323 aa8.62□□□□□ -1.03
VARS-222ENST00000470953 KDM2AQ9Y2K7 1162 aa8.62□□□□□ -1.03
VARS-222ENST00000470953 BRCA2P51587 3418 aa8.62□□□□□ -1.03
VARS-222ENST00000470953 DICER1Q9UPY3 1922 aaKnown RBP8.61□□□□□ -1.03
VARS-222ENST00000470953 COL9A1P20849 921 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 CIAPIN1Q6FI81 312 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 CABP2Q9NPB3 220 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 CABP1Q9NZU7 370 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 RAPGEFL1Q9UHV5 662 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 SCN4AP35499 1836 aa8.61□□□□□ -1.03
VARS-222ENST00000470953 LINC00116Q8NCU8 138 aa8.6□□□□□ -1.03
VARS-222ENST00000470953 DDX21Q9NR30 783 aaKnown RBP eCLIP8.6□□□□□ -1.03
VARS-222ENST00000470953 PARP3Q9Y6F1 533 aa8.6□□□□□ -1.03
VARS-222ENST00000470953 CACNA1AO00555 2505 aa8.6□□□□□ -1.03
VARS-222ENST00000470953 RANBP2P49792 3224 aaKnown RBP8.6□□□□□ -1.03
VARS-222ENST00000470953 NFAT5O94916 1531 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 IQCA1LA6NCM1 817 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 GNPATO15228 680 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 SRPK2P78362 688 aaKnown RBP8.59□□□□□ -1.03
VARS-222ENST00000470953 TMF1P82094 1093 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 NBPF1Q3BBV0 1214 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 ERFEQ4G0M1 354 aa8.59□□□□□ -1.03
VARS-222ENST00000470953 CTU1Q7Z7A3 348 aaKnown RBP8.58□□□□□ -1.04
VARS-222ENST00000470953 NLGN1Q8N2Q7 840 aa8.58□□□□□ -1.04
VARS-222ENST00000470953 KCNH5Q8NCM2 988 aa8.58□□□□□ -1.04
VARS-222ENST00000470953 DCAF11Q8TEB1 546 aa8.58□□□□□ -1.04
VARS-222ENST00000470953 ZIC5Q96T25 663 aa8.58□□□□□ -1.04
VARS-222ENST00000470953 TLL2Q9Y6L7 1015 aa8.58□□□□□ -1.04
VARS-222ENST00000470953 PLA2G5P39877 138 aa8.57□□□□□ -1.04
VARS-222ENST00000470953 CST9Q5W186 159 aa8.57□□□□□ -1.04
VARS-222ENST00000470953 ANKRD24Q8TF21 1146 aa8.57□□□□□ -1.04
VARS-222ENST00000470953 OTUD5Q96G74 571 aa8.57□□□□□ -1.04
VARS-222ENST00000470953 TTC21BQ7Z4L5 1316 aa8.56□□□□□ -1.04
VARS-222ENST00000470953 GYS1P13807 737 aa8.56□□□□□ -1.04
VARS-222ENST00000470953 HMGB2P26583 209 aaKnown RBP8.56□□□□□ -1.04
VARS-222ENST00000470953 L3MBTL3Q96JM7 780 aaPredicted RBP8.56□□□□□ -1.04
VARS-222ENST00000470953 MAP2P11137 1827 aaKnown RBP8.56□□□□□ -1.04
VARS-222ENST00000470953 TRPM7Q96QT4 1865 aa8.55□□□□□ -1.04
VARS-222ENST00000470953 HOXD11P31277 338 aaPredicted RBP8.55□□□□□ -1.04
VARS-222ENST00000470953 SNX27Q96L92 541 aa8.55□□□□□ -1.04
VARS-222ENST00000470953 SCN11AQ9UI33 1791 aa8.55□□□□□ -1.04
VARS-222ENST00000470953 CEP290O15078 2479 aa8.55□□□□□ -1.04
VARS-222ENST00000470953 LAMB4A4D0S4 1761 aa8.54□□□□□ -1.04
VARS-222ENST00000470953 DLEC1Q9Y238 1755 aa8.54□□□□□ -1.04
VARS-222ENST00000470953 TRAF5O00463 557 aa8.54□□□□□ -1.04
VARS-222ENST00000470953 EPHX2P34913 555 aa8.54□□□□□ -1.04
VARS-222ENST00000470953 POTEFA5A3E0 1075 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 DDR1Q08345 913 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 ITPK1Q13572 414 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 MPRIPQ6WCQ1 1025 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 CHRDL2Q6WN34 429 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 SAPCD2Q86UD0 394 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 FAM122AQ96E09 287 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 RBM27Q9P2N5 1060 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms