RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CFAP99D6REC4 459 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 IRF5Q13568 498 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 TRIM34Q9BYJ4 488 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 FER1L4A9Z1Z3 1794 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 XRN1Q8IZH2 1706 aaKnown RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 ADAMTSL3P82987 1691 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 N4BP2Q86UW6 1770 aaPredicted RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 BCAMP50895 628 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 PUS10Q3MIT2 529 aaKnown RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 PROSER2Q86WR7 435 aaPredicted RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 NPATQ14207 1427 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 FMN2Q9NZ56 1722 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 TUBGCP6Q96RT7 1819 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 ADGRB2O60241 1585 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 PIK3C2GO75747 1445 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 FUT2Q10981 343 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 FLIIQ13045 1269 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 BANK1Q8NDB2 785 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 CD163L1Q9NR16 1453 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 LILRB3O75022 631 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 DIXDC1Q155Q3 683 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 SWT1Q5T5J6 900 aaKnown RBP3.42□□□□□ -1.86
VPS54-202ENST00000354504 NLRP1Q9C000 1473 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 CNTLNQ9NXG0 1405 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 SAMD7Q7Z3H4 446 aa3.42□□□□□ -1.86
VPS54-202ENST00000354504 CHD2O14647 1828 aaKnown RBP3.42□□□□□ -1.86
VPS54-202ENST00000354504 YEATS2Q9ULM3 1422 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 A6NJR5 290 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 HOXA2O43364 376 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 NEUROD1Q13562 356 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 ATP1B4Q9UN42 357 aaPredicted RBP3.41□□□□□ -1.86
VPS54-202ENST00000354504 ANKRD30AQ9BXX3 1397 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 ERVK-7P63135 1459 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 MMP16P51512 607 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 PPP2R2DQ66LE6 453 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 THAP11Q96EK4 314 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 RRP7BPQ9NSQ0 103 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 PTPN5P54829 565 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 Q3C1V9 767 aa3.41□□□□□ -1.86
VPS54-202ENST00000354504 MED14O60244 1454 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 CCDC7Q96M83 1385 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 SPTLC1O15269 473 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 AP1G2O75843 785 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 APLP1P51693 650 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 HNRNPMP52272 730 aaKnown RBP eCLIP3.4□□□□□ -1.862e-6■■■■□ 21.4
VPS54-202ENST00000354504 DIEXFQ68CQ4 756 aaKnown RBP3.4□□□□□ -1.86
VPS54-202ENST00000354504 L3MBTL2Q969R5 705 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 CPS1P31327 1500 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 CDC42BPGQ6DT37 1551 aa3.4□□□□□ -1.86
VPS54-202ENST00000354504 GDF9O60383 454 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 USP17L8P0C7I0 530 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 ABL2P42684 1182 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 UCN2Q96RP3 112 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 TESK2Q96S53 571 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 ZFYVE9O95405 1425 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 PEAK1Q9H792 1746 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 PHRF1Q9P1Y6 1649 aaKnown RBP3.4□□□□□ -1.87
VPS54-202ENST00000354504 LRPPRCP42704 1394 aaKnown RBP3.4□□□□□ -1.87
VPS54-202ENST00000354504 MAP2P11137 1827 aaKnown RBP3.4□□□□□ -1.87
VPS54-202ENST00000354504 PPP1R18Q6NYC8 613 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 TRAF7Q6Q0C0 670 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 RETREG2Q8NC44 543 aa3.4□□□□□ -1.87
VPS54-202ENST00000354504 CAMTA1Q9Y6Y1 1673 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.39□□□□□ -1.87
VPS54-202ENST00000354504 FAM50AQ14320 339 aaKnown RBP3.39□□□□□ -1.87
VPS54-202ENST00000354504 CCDC184Q52MB2 194 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 LCE2AQ5TA79 106 aaPredicted RBP3.39□□□□□ -1.87
VPS54-202ENST00000354504 SULF1Q8IWU6 871 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 RDH13Q8NBN7 331 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 ZNF428Q96B54 188 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 ALKQ9UM73 1620 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 COL3A1P02461 1466 aaPredicted RBP3.39□□□□□ -1.87
VPS54-202ENST00000354504 ITSN1Q15811 1721 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 WIPF1O43516 503 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 VAC14Q08AM6 782 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 GRIPAP1Q4V328 841 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 SPRYD7Q5W111 196 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 RNF19BQ6ZMZ0 732 aa3.39□□□□□ -1.87
VPS54-202ENST00000354504 KDM4AO75164 1064 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 SCNN1AP37088 669 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 GCGRP47871 477 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 BLOC1S3Q6QNY0 202 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 GLMNQ92990 594 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 KIFC2Q96AC6 838 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 SIPA1L3O60292 1781 aaPredicted RBP3.38□□□□□ -1.87
VPS54-202ENST00000354504 NUP155O75694 1391 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 DISP3Q9P2K9 1392 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 IQSEC2Q5JU85 1478 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 DLC1Q96QB1 1528 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 SPDYE5A6NIY4 337 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 TSC1Q92574 1164 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 CHIC2Q9UKJ5 165 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 TRPM3Q9HCF6 1732 aaPredicted RBP3.38□□□□□ -1.87
VPS54-202ENST00000354504 CCDC144AA2RUR9 1427 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 CFDP1Q9UEE9 299 aaPredicted RBP3.38□□□□□ -1.87
VPS54-202ENST00000354504 KIF7Q2M1P5 1343 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 CD109Q6YHK3 1445 aa3.38□□□□□ -1.87
VPS54-202ENST00000354504 LRRC37A3O60309 1634 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 PIK3C2AO00443 1686 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 RNF40O75150 1001 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms