Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
COPB1P53618 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.02■□□□□ 0.95
COPB1P53618 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
COPB1P53618 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COPB1P53618 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.01■□□□□ 0.95
COPB1P53618 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.01■□□□□ 0.95
COPB1P53618 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.01■□□□□ 0.95
COPB1P53618 AL138781.1-201ENST00000566567 1274 ntBASIC21.01■□□□□ 0.95
COPB1P53618 SOX15-203ENST00000570788 1093 ntBASIC21.01■□□□□ 0.95
COPB1P53618 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.01■□□□□ 0.95
COPB1P53618 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COPB1P53618 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COPB1P53618 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COPB1P53618 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
COPB1P53618 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21■□□□□ 0.95
COPB1P53618 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21■□□□□ 0.95
COPB1P53618 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
COPB1P53618 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21■□□□□ 0.95
COPB1P53618 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
COPB1P53618 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COPB1P53618 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COPB1P53618 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21■□□□□ 0.95
COPB1P53618 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21■□□□□ 0.95
COPB1P53618 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21■□□□□ 0.95
COPB1P53618 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
COPB1P53618 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COPB1P53618 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21■□□□□ 0.95
COPB1P53618 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.99■□□□□ 0.95
COPB1P53618 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.99■□□□□ 0.95
COPB1P53618 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.99■□□□□ 0.95
COPB1P53618 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.99■□□□□ 0.95
COPB1P53618 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.99■□□□□ 0.95
COPB1P53618 AC008687.6-201ENST00000596318 630 ntBASIC20.99■□□□□ 0.95
COPB1P53618 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.99■□□□□ 0.95
COPB1P53618 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.99■□□□□ 0.95
COPB1P53618 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.99■□□□□ 0.95
COPB1P53618 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COPB1P53618 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.99■□□□□ 0.95
COPB1P53618 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.99■□□□□ 0.95
COPB1P53618 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COPB1P53618 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 AC007613.1-201ENST00000572811 2597 ntBASIC20.98■□□□□ 0.95
COPB1P53618 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.98■□□□□ 0.95
COPB1P53618 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
COPB1P53618 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.98■□□□□ 0.95
COPB1P53618 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
COPB1P53618 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
COPB1P53618 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
COPB1P53618 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
COPB1P53618 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COPB1P53618 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COPB1P53618 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms