Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 PTBP1P-201ENST00000554374 1601 ntBASIC19.26■□□□□ 0.67
LSM1O15116 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.26■□□□□ 0.67
LSM1O15116 KRT18P11-201ENST00000435214 1283 ntBASIC19.26■□□□□ 0.67
LSM1O15116 AC087623.3-201ENST00000607047 1098 ntBASIC19.26■□□□□ 0.67
LSM1O15116 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.26■□□□□ 0.67
LSM1O15116 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.26■□□□□ 0.67
LSM1O15116 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.26■□□□□ 0.67
LSM1O15116 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LSM1O15116 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LSM1O15116 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LSM1O15116 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.25■□□□□ 0.67
LSM1O15116 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.25■□□□□ 0.67
LSM1O15116 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
LSM1O15116 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM1O15116 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM1O15116 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.24■□□□□ 0.67
LSM1O15116 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.24■□□□□ 0.67
LSM1O15116 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM1O15116 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.24■□□□□ 0.67
LSM1O15116 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
LSM1O15116 MFSD11-216ENST00000590393 1141 ntBASIC19.24■□□□□ 0.67
LSM1O15116 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LSM1O15116 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
LSM1O15116 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.24■□□□□ 0.67
LSM1O15116 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LSM1O15116 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LSM1O15116 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LSM1O15116 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LSM1O15116 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM1O15116 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.23■□□□□ 0.67
LSM1O15116 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM1O15116 AC137761.2-201ENST00000561729 223 ntBASIC19.23■□□□□ 0.67
LSM1O15116 AC145350.3-201ENST00000569033 163 ntBASIC19.23■□□□□ 0.67
LSM1O15116 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM1O15116 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM1O15116 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM1O15116 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM1O15116 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LSM1O15116 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM1O15116 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM1O15116 TREX1-205ENST00000625293 1783 ntBASIC19.22■□□□□ 0.67
LSM1O15116 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.22■□□□□ 0.67
LSM1O15116 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 RARRES2P4-201ENST00000514074 484 ntBASIC19.22■□□□□ 0.67
LSM1O15116 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM1O15116 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms