RNA–Protein interactions for RNA: ENST00000398978.7

COL13A1-205, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS P4 TSL 5 BASIC

Gene COL13A1, Length 3,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-205ENST00000398978 NISCHQ9Y2I1 1504 aa39.75■■■■□ 3.95
COL13A1-205ENST00000398978 SHROOM4Q9ULL8 1493 aa34.69■■■■□ 3.14
COL13A1-205ENST00000398978 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
COL13A1-205ENST00000398978 DCAF8L2P0C7V8 631 aa33.65■■■□□ 2.98
COL13A1-205ENST00000398978 ZCCHC6Q5VYS8 1495 aaKnown RBP33.6■■■□□ 2.97
COL13A1-205ENST00000398978 CCDC180Q9P1Z9 1646 aa33.4■■■□□ 2.94
COL13A1-205ENST00000398978 CHIC1Q5VXU3 224 aa32.96■■■□□ 2.87
COL13A1-205ENST00000398978 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
COL13A1-205ENST00000398978 PCGF6Q9BYE7 350 aa32.36■■■□□ 2.77
COL13A1-205ENST00000398978 DCAF1Q9Y4B6 1507 aa32.28■■■□□ 2.76
COL13A1-205ENST00000398978 LOC105371045A0A1W2PR82 267 aa32.27■■■□□ 2.76
COL13A1-205ENST00000398978 HRCP23327 699 aa32.22■■■□□ 2.75
COL13A1-205ENST00000398978 PPARGC1BQ86YN6 1023 aaKnown RBP31.93■■■□□ 2.7
COL13A1-205ENST00000398978 SCRIBQ14160 1630 aa31.85■■■□□ 2.69
COL13A1-205ENST00000398978 ABCC9O60706 1549 aa31.73■■■□□ 2.67
COL13A1-205ENST00000398978 RSF1Q96T23 1441 aaPredicted RBP31.65■■■□□ 2.66
COL13A1-205ENST00000398978 FAM9AQ8IZU1 332 aaPredicted RBP31.6■■■□□ 2.65
COL13A1-205ENST00000398978 EHMT2Q96KQ7 1210 aa31.6■■■□□ 2.65
COL13A1-205ENST00000398978 TRIM41Q8WV44 630 aa31.51■■■□□ 2.64
COL13A1-205ENST00000398978 RB1CC1Q8TDY2 1594 aa31.41■■■□□ 2.62
COL13A1-205ENST00000398978 TRIM26Q12899 539 aaPredicted RBP31.39■■■□□ 2.62
COL13A1-205ENST00000398978 CECR2Q9BXF3 1484 aa31.26■■■□□ 2.59
COL13A1-205ENST00000398978 MROH2BQ7Z745 1585 aa31.08■■■□□ 2.57
COL13A1-205ENST00000398978 NACADO15069 1562 aa30.95■■■□□ 2.55
COL13A1-205ENST00000398978 WIZO95785 1651 aa30.94■■■□□ 2.54
COL13A1-205ENST00000398978 ZEB1P37275 1124 aaPredicted RBP30.59■■■□□ 2.49
COL13A1-205ENST00000398978 TTBK1Q5TCY1 1321 aaPredicted RBP30.56■■■□□ 2.48
COL13A1-205ENST00000398978 BAZ1AQ9NRL2 1556 aaPredicted RBP30.51■■■□□ 2.47
COL13A1-205ENST00000398978 ABCC8Q09428 1581 aa30.44■■■□□ 2.46
COL13A1-205ENST00000398978 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.42■■■□□ 2.46
COL13A1-205ENST00000398978 EIF4G1Q04637 1599 aaKnown RBP30.34■■■□□ 2.45
COL13A1-205ENST00000398978 CCDC88BA6NC98 1476 aa30.33■■■□□ 2.45
COL13A1-205ENST00000398978 PABPN1Q86U42 306 aaKnown RBP eCLIP30.3■■■□□ 2.44
COL13A1-205ENST00000398978 CCER1Q8TC90 406 aaPredicted RBP30.23■■■□□ 2.43
COL13A1-205ENST00000398978 TOP2AP11388 1531 aaKnown RBP30.23■■■□□ 2.43
COL13A1-205ENST00000398978 SMARCA4P51532 1647 aa30.22■■■□□ 2.43
COL13A1-205ENST00000398978 SOGA1O94964 1423 aa30.2■■■□□ 2.42
COL13A1-205ENST00000398978 SMARCA2P51531 1590 aa30.16■■■□□ 2.42
COL13A1-205ENST00000398978 UNC13AQ9UPW8 1703 aa30.14■■■□□ 2.42
COL13A1-205ENST00000398978 RUSC2Q8N2Y8 1516 aa30.09■■■□□ 2.41
COL13A1-205ENST00000398978 UBTFP17480 764 aaKnown RBP30.08■■■□□ 2.41
COL13A1-205ENST00000398978 CEP162Q5TB80 1403 aa30.04■■■□□ 2.4
COL13A1-205ENST00000398978 CSRNP3Q8WYN3 585 aa29.97■■■□□ 2.39
COL13A1-205ENST00000398978 SCAF1Q9H7N4 1312 aaKnown RBP29.96■■■□□ 2.39
COL13A1-205ENST00000398978 TNIKQ9UKE5 1360 aa29.84■■■□□ 2.37
COL13A1-205ENST00000398978 WRNQ14191 1432 aaPredicted RBP eCLIP29.8■■■□□ 2.36
COL13A1-205ENST00000398978 RANGAP1P46060 587 aaPredicted RBP29.8■■■□□ 2.36
COL13A1-205ENST00000398978 BICRAQ9NZM4 1560 aa29.76■■■□□ 2.36
COL13A1-205ENST00000398978 DIEXFQ68CQ4 756 aaKnown RBP29.68■■■□□ 2.34
COL13A1-205ENST00000398978 GOLGA3Q08378 1498 aa29.64■■■□□ 2.34
COL13A1-205ENST00000398978 EEA1Q15075 1411 aa29.63■■■□□ 2.33
COL13A1-205ENST00000398978 HNRNPUL2Q1KMD3 747 aaKnown RBP29.63■■■□□ 2.33
COL13A1-205ENST00000398978 SYNJ1O43426 1573 aa29.59■■■□□ 2.33
COL13A1-205ENST00000398978 NEUROD1Q13562 356 aa29.59■■■□□ 2.33
COL13A1-205ENST00000398978 ACIN1Q9UKV3 1341 aaKnown RBP29.49■■■□□ 2.31
COL13A1-205ENST00000398978 ATAD2BQ9ULI0 1458 aa29.47■■■□□ 2.31
COL13A1-205ENST00000398978 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
COL13A1-205ENST00000398978 CLIP1P30622 1438 aa29.43■■■□□ 2.3
COL13A1-205ENST00000398978 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
COL13A1-205ENST00000398978 PEG3Q9GZU2 1588 aa29.41■■■□□ 2.3
COL13A1-205ENST00000398978 RAPGEF2Q9Y4G8 1499 aa29.38■■■□□ 2.29
COL13A1-205ENST00000398978 APLP2Q06481 763 aa29.33■■■□□ 2.29
COL13A1-205ENST00000398978 ZNF316A6NFI3 1004 aaPredicted RBP29.32■■■□□ 2.28
COL13A1-205ENST00000398978 GTF3C3Q9Y5Q9 886 aa29.31■■■□□ 2.28
COL13A1-205ENST00000398978 YTHDC1Q96MU7 727 aaKnown RBP29.29■■■□□ 2.28
COL13A1-205ENST00000398978 KIF21BO75037 1637 aa29.27■■■□□ 2.28
COL13A1-205ENST00000398978 VPS8Q8N3P4 1428 aa29.23■■■□□ 2.27
COL13A1-205ENST00000398978 CENPBP07199 599 aaPredicted RBP29.21■■■□□ 2.27
COL13A1-205ENST00000398978 MIER1Q8N108 512 aa29.09■■■□□ 2.25
COL13A1-205ENST00000398978 PELP1Q8IZL8 1130 aaKnown RBP29.06■■■□□ 2.24
COL13A1-205ENST00000398978 TOP2BQ02880 1626 aa29.04■■■□□ 2.24
COL13A1-205ENST00000398978 KANK4Q5T7N3 995 aaPredicted RBP29.03■■■□□ 2.24
COL13A1-205ENST00000398978 ARAP1Q96P48 1450 aa28.89■■■□□ 2.22
COL13A1-205ENST00000398978 ITGAEP38570 1179 aa28.88■■■□□ 2.21
COL13A1-205ENST00000398978 CUX1P39880 1505 aa28.87■■■□□ 2.21
COL13A1-205ENST00000398978 PRXQ9BXM0 1461 aa28.87■■■□□ 2.21
COL13A1-205ENST00000398978 BIVM-ERCC5R4GMW8 1640 aa28.86■■■□□ 2.21
COL13A1-205ENST00000398978 DHX57Q6P158 1386 aaKnown RBP28.76■■■□□ 2.19
COL13A1-205ENST00000398978 KIF27Q86VH2 1401 aa28.75■■■□□ 2.19
COL13A1-205ENST00000398978 ERICH3Q5RHP9 1530 aa28.74■■■□□ 2.19
COL13A1-205ENST00000398978 NCAPD3P42695 1498 aa28.74■■■□□ 2.19
COL13A1-205ENST00000398978 HMGXB3Q12766 1538 aa28.64■■■□□ 2.18
COL13A1-205ENST00000398978 ARHGAP35Q9NRY4 1499 aa28.62■■■□□ 2.17
COL13A1-205ENST00000398978 CFTRP13569 1480 aa28.62■■■□□ 2.17
COL13A1-205ENST00000398978 P3H3Q8IVL6 736 aa28.57■■■□□ 2.16
COL13A1-205ENST00000398978 CUX2O14529 1486 aa28.57■■■□□ 2.16
COL13A1-205ENST00000398978 ATP1B4Q9UN42 357 aaPredicted RBP28.54■■■□□ 2.16
COL13A1-205ENST00000398978 CCNB3Q8WWL7 1395 aa28.53■■■□□ 2.16
COL13A1-205ENST00000398978 RRBP1Q9P2E9 1410 aaKnown RBP28.52■■■□□ 2.16
COL13A1-205ENST00000398978 IGF1RP08069 1367 aa28.5■■■□□ 2.15
COL13A1-205ENST00000398978 CLSPNQ9HAW4 1339 aa28.46■■■□□ 2.15
COL13A1-205ENST00000398978 CARMIL1Q5VZK9 1371 aa28.4■■■□□ 2.14
COL13A1-205ENST00000398978 FAM50AQ14320 339 aaKnown RBP28.4■■■□□ 2.14
COL13A1-205ENST00000398978 RAB3GAP2Q9H2M9 1393 aa28.38■■■□□ 2.13
COL13A1-205ENST00000398978 FGD5Q6ZNL6 1462 aa28.36■■■□□ 2.13
COL13A1-205ENST00000398978 CADPSQ9ULU8 1353 aa28.35■■■□□ 2.13
COL13A1-205ENST00000398978 SIN3AQ96ST3 1273 aa28.3■■■□□ 2.12
COL13A1-205ENST00000398978 KCNH8Q96L42 1107 aa28.3■■■□□ 2.12
COL13A1-205ENST00000398978 PHLDB1Q86UU1 1377 aa28.29■■■□□ 2.12
COL13A1-205ENST00000398978 TIAM1Q13009 1591 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms