Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YBL008W-AYBL008W-A 240 nt1.67□□□□□ -2.14
RPN11P43588 SKI3YPR189W 4299 nt1.67□□□□□ -2.14
RPN11P43588 SEC5YDR166C 2916 nt1.66□□□□□ -2.14
RPN11P43588 RPL31AYDL075W 342 nt1.66□□□□□ -2.14
RPN11P43588 RAD50YNL250W 3939 nt1.66□□□□□ -2.14
RPN11P43588 ENV11YGR071C 2583 nt1.65□□□□□ -2.14
RPN11P43588 snR8snR8 190 nt1.65□□□□□ -2.15
RPN11P43588 YMR175W-AYMR175W-A 195 nt1.65□□□□□ -2.15
RPN11P43588 VIK1YPL253C 1944 nt1.64□□□□□ -2.15
RPN11P43588 YHR063W-AYHR063W-A 336 nt1.64□□□□□ -2.15
RPN11P43588 tV(UAC)BtV(UAC)B 74 nt1.64□□□□□ -2.15
RPN11P43588 tV(UAC)DtV(UAC)D 74 nt1.64□□□□□ -2.15
RPN11P43588 SCW11YGL028C 1629 nt1.64□□□□□ -2.15
RPN11P43588 YCK3YER123W 1575 nt1.64□□□□□ -2.15
RPN11P43588 COG8YML071C 1824 nt1.63□□□□□ -2.15
RPN11P43588 CDC25YLR310C 4770 nt1.63□□□□□ -2.15
RPN11P43588 MAD1YGL086W 2250 nt1.63□□□□□ -2.15
RPN11P43588 YGL041CYGL041C 204 nt1.63□□□□□ -2.15
RPN11P43588 YMR158W-BYMR158W-B 321 nt1.63□□□□□ -2.15
RPN11P43588 RAD34YDR314C 2079 nt1.63□□□□□ -2.15
RPN11P43588 YEL020C-BYEL020C-B 198 nt1.62□□□□□ -2.15
RPN11P43588 SPO24YPR036W-A 204 nt1.62□□□□□ -2.15
RPN11P43588 LCD1YDR499W 2244 nt1.62□□□□□ -2.15
RPN11P43588 RPL34BYIL052C 366 nt1.61□□□□□ -2.15
RPN11P43588 CSE2YNR010W 450 nt1.61□□□□□ -2.15
RPN11P43588 MDS3YGL197W 4464 nt1.61□□□□□ -2.15
RPN11P43588 NIP100YPL174C 2607 nt1.6□□□□□ -2.15
RPN11P43588 HMRA2YCR096C 360 nt1.6□□□□□ -2.15
RPN11P43588 YOR015WYOR015W 360 nt1.6□□□□□ -2.15
RPN11P43588 YOR108C-AYOR108C-A 210 nt1.6□□□□□ -2.15
RPN11P43588 TRM732YMR259C 4263 nt1.6□□□□□ -2.15
RPN11P43588 HKR1YDR420W 5409 nt1.6□□□□□ -2.15
RPN11P43588 NOC3YLR002C 1992 nt1.59□□□□□ -2.15
RPN11P43588 YGL217CYGL217C 342 nt1.59□□□□□ -2.15
RPN11P43588 YNL028WYNL028W 318 nt1.59□□□□□ -2.15
RPN11P43588 snR80snR80 171 nt1.58□□□□□ -2.16
RPN11P43588 YOR008C-AYOR008C-A 225 nt1.58□□□□□ -2.16
RPN11P43588 snR14snR14 160 nt1.58□□□□□ -2.16
RPN11P43588 YBR064WYBR064W 429 nt1.58□□□□□ -2.16
RPN11P43588 FIG4YNL325C 2640 nt1.58□□□□□ -2.16
RPN11P43588 SIP4YJL089W 2490 nt1.57□□□□□ -2.16
RPN11P43588 KCS1YDR017C 3153 nt1.57□□□□□ -2.16
RPN11P43588 YJL022WYJL022W 309 nt1.57□□□□□ -2.16
RPN11P43588 SLX4YLR135W 2247 nt1.56□□□□□ -2.16
RPN11P43588 YLL007CYLL007C 1998 nt1.56□□□□□ -2.16
RPN11P43588 tT(UGU)HtT(UGU)H 72 nt1.56□□□□□ -2.16
RPN11P43588 COF1YLL050C 432 nt1.56□□□□□ -2.16
RPN11P43588 snR49snR49 165 nt1.56□□□□□ -2.16
RPN11P43588 SPO75YLL005C 2607 nt1.56□□□□□ -2.16
RPN11P43588 PDE2YOR360C 1581 nt1.55□□□□□ -2.16
RPN11P43588 PKH2YOL100W 3246 nt1.55□□□□□ -2.16
RPN11P43588 YGL188C-AYGL188C-A 141 nt1.55□□□□□ -2.16
RPN11P43588 YJL197C-AYJL197C-A 282 nt1.55□□□□□ -2.16
RPN11P43588 YMR321CYMR321C 318 nt1.55□□□□□ -2.16
RPN11P43588 YOR376WYOR376W 369 nt1.55□□□□□ -2.16
RPN11P43588 NUP145YGL092W 3954 nt1.55□□□□□ -2.16
RPN11P43588 SLI15YBR156C 2097 nt1.54□□□□□ -2.16
RPN11P43588 YGR109W-BYGR109W-B 4644 nt1.54□□□□□ -2.16
RPN11P43588 YGL052WYGL052W 306 nt1.54□□□□□ -2.16
RPN11P43588 YLR120W-AYLR120W-A 102 nt1.54□□□□□ -2.16
RPN11P43588 YLR140WYLR140W 327 nt1.54□□□□□ -2.16
RPN11P43588 UFD2YDL190C 2886 nt1.54□□□□□ -2.16
RPN11P43588 SPO21YOL091W 1830 nt1.54□□□□□ -2.16
RPN11P43588 CUL3YGR003W 2235 nt1.53□□□□□ -2.16
RPN11P43588 EMC5YIL027C 426 nt1.53□□□□□ -2.16
RPN11P43588 RPS25BYLR333C 327 nt1.53□□□□□ -2.16
RPN11P43588 ALK1YGL021W 2283 nt1.52□□□□□ -2.17
RPN11P43588 YNL284C-BYNL284C-B 5268 nt1.52□□□□□ -2.17
RPN11P43588 RPS27BYHR021C 249 nt1.52□□□□□ -2.17
RPN11P43588 YMR230W-AYMR230W-A 189 nt1.52□□□□□ -2.17
RPN11P43588 YOR218CYOR218C 420 nt1.52□□□□□ -2.17
RPN11P43588 YMR172C-AYMR172C-A 384 nt1.51□□□□□ -2.17
RPN11P43588 YOL014WYOL014W 375 nt1.51□□□□□ -2.17
RPN11P43588 PAM16YJL104W 450 nt1.5□□□□□ -2.17
RPN11P43588 YJL120WYJL120W 324 nt1.5□□□□□ -2.17
RPN11P43588 IES4YOR189W 351 nt1.5□□□□□ -2.17
RPN11P43588 YPR092WYPR092W 306 nt1.5□□□□□ -2.17
RPN11P43588 snR55snR55 98 nt1.49□□□□□ -2.17
RPN11P43588 ECM12YHR021W-A 456 nt1.49□□□□□ -2.17
RPN11P43588 ABF2YMR072W 552 nt1.49□□□□□ -2.17
RPN11P43588 YOL155W-AYOL155W-A 135 nt1.49□□□□□ -2.17
RPN11P43588 YBR206WYBR206W 324 nt1.49□□□□□ -2.17
RPN11P43588 PBY1YBR094W 2262 nt1.49□□□□□ -2.17
RPN11P43588 FYV8YGR196C 2454 nt1.48□□□□□ -2.17
RPN11P43588 snR74snR74 88 nt1.48□□□□□ -2.17
RPN11P43588 YOR019WYOR019W 2193 nt1.48□□□□□ -2.17
RPN11P43588 POL5YEL055C 3069 nt1.48□□□□□ -2.17
RPN11P43588 SLD3YGL113W 2007 nt1.47□□□□□ -2.17
RPN11P43588 YIR044CYIR044C 186 nt1.47□□□□□ -2.17
RPN11P43588 YMR247W-AYMR247W-A 144 nt1.47□□□□□ -2.17
RPN11P43588 YOR011W-AYOR011W-A 207 nt1.47□□□□□ -2.17
RPN11P43588 NPR2YEL062W 1848 nt1.47□□□□□ -2.17
RPN11P43588 AHC1YOR023C 1701 nt1.46□□□□□ -2.18
RPN11P43588 YDL206WYDL206W 2289 nt1.46□□□□□ -2.18
RPN11P43588 PTP2YOR208W 2253 nt1.46□□□□□ -2.18
RPN11P43588 SPC110YDR356W 2835 nt1.46□□□□□ -2.18
RPN11P43588 NCA2YPR155C 1851 nt1.46□□□□□ -2.18
RPN11P43588 YDR521WYDR521W 336 nt1.46□□□□□ -2.18
RPN11P43588 YLL054CYLL054C 2532 nt1.46□□□□□ -2.18
RPN11P43588 GPG1YGL121C 381 nt1.45□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 24.6 ms