Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YIR044CYIR044C 186 nt1.6□□□□□ -2.15
SSM4P40318 SLI15YBR156C 2097 nt1.6□□□□□ -2.15
SSM4P40318 POL5YEL055C 3069 nt1.6□□□□□ -2.15
SSM4P40318 YAR029WYAR029W 225 nt1.59□□□□□ -2.16
SSM4P40318 YLL054CYLL054C 2532 nt1.58□□□□□ -2.16
SSM4P40318 YKL136WYKL136W 399 nt1.58□□□□□ -2.16
SSM4P40318 SWI4YER111C 3282 nt1.57□□□□□ -2.16
SSM4P40318 YDR048CYDR048C 315 nt1.57□□□□□ -2.16
SSM4P40318 OST1YJL002C 1431 nt1.57□□□□□ -2.16
SSM4P40318 IFH1YLR223C 3258 nt1.57□□□□□ -2.16
SSM4P40318 snR14snR14 160 nt1.56□□□□□ -2.16
SSM4P40318 LCD1YDR499W 2244 nt1.55□□□□□ -2.16
SSM4P40318 HTL1YCR020W-B 237 nt1.55□□□□□ -2.16
SSM4P40318 YJR011CYJR011C 786 nt1.55□□□□□ -2.16
SSM4P40318 RPS30BYOR182C 192 nt1.55□□□□□ -2.16
SSM4P40318 snR36snR36 182 nt1.55□□□□□ -2.16
SSM4P40318 MPT5YGL178W 2580 nt1.55□□□□□ -2.16
SSM4P40318 BPH1YCR032W 6504 nt1.54□□□□□ -2.16
SSM4P40318 NHP2YDL208W 471 nt1.54□□□□□ -2.16
SSM4P40318 YER097WYER097W 330 nt1.54□□□□□ -2.16
SSM4P40318 YPR063CYPR063C 423 nt1.54□□□□□ -2.16
SSM4P40318 SPT21YMR179W 2277 nt1.53□□□□□ -2.16
SSM4P40318 YDL211CYDL211C 1119 nt1.53□□□□□ -2.16
SSM4P40318 YFL063WYFL063W 456 nt1.53□□□□□ -2.16
SSM4P40318 YJL015CYJL015C 285 nt1.53□□□□□ -2.16
SSM4P40318 PAN2YGL094C 3348 nt1.53□□□□□ -2.16
SSM4P40318 YDR413CYDR413C 576 nt1.52□□□□□ -2.17
SSM4P40318 YFL032WYFL032W 321 nt1.52□□□□□ -2.17
SSM4P40318 RPL34BYIL052C 366 nt1.52□□□□□ -2.17
SSM4P40318 AZF1YOR113W 2745 nt1.52□□□□□ -2.17
SSM4P40318 CUL3YGR003W 2235 nt1.51□□□□□ -2.17
SSM4P40318 RPL39YJL189W 156 nt1.51□□□□□ -2.17
SSM4P40318 APL3YBL037W 3078 nt1.5□□□□□ -2.17
SSM4P40318 UBP3YER151C 2739 nt1.5□□□□□ -2.17
SSM4P40318 YCK3YER123W 1575 nt1.5□□□□□ -2.17
SSM4P40318 MMS4YBR098W 2076 nt1.5□□□□□ -2.17
SSM4P40318 tV(UAC)BtV(UAC)B 74 nt1.49□□□□□ -2.17
SSM4P40318 tV(UAC)DtV(UAC)D 74 nt1.49□□□□□ -2.17
SSM4P40318 YBL008W-AYBL008W-A 240 nt1.49□□□□□ -2.17
SSM4P40318 SCC2YDR180W 4482 nt1.49□□□□□ -2.17
SSM4P40318 NUP188YML103C 4968 nt1.49□□□□□ -2.17
SSM4P40318 NUP145YGL092W 3954 nt1.48□□□□□ -2.17
SSM4P40318 YDR521WYDR521W 336 nt1.48□□□□□ -2.17
SSM4P40318 GPG1YGL121C 381 nt1.48□□□□□ -2.17
SSM4P40318 YIL020C-AYIL020C-A 339 nt1.48□□□□□ -2.17
SSM4P40318 HKR1YDR420W 5409 nt1.48□□□□□ -2.17
SSM4P40318 PKH2YOL100W 3246 nt1.48□□□□□ -2.17
SSM4P40318 PTP2YOR208W 2253 nt1.48□□□□□ -2.17
SSM4P40318 AIM44YPL158C 2277 nt1.48□□□□□ -2.17
SSM4P40318 STE5YDR103W 2754 nt1.47□□□□□ -2.17
SSM4P40318 YLL007CYLL007C 1998 nt1.47□□□□□ -2.17
SSM4P40318 SET3YKR029C 2256 nt1.47□□□□□ -2.17
SSM4P40318 PBY1YBR094W 2262 nt1.47□□□□□ -2.17
SSM4P40318 SLD3YGL113W 2007 nt1.47□□□□□ -2.17
SSM4P40318 DBP6YNR038W 1890 nt1.47□□□□□ -2.17
SSM4P40318 SEC3YER008C 4011 nt1.46□□□□□ -2.18
SSM4P40318 YDR344CYDR344C 444 nt1.45□□□□□ -2.18
SSM4P40318 YDL206WYDL206W 2289 nt1.45□□□□□ -2.18
SSM4P40318 NUP157YER105C 4176 nt1.45□□□□□ -2.18
SSM4P40318 HMRA2YCR096C 360 nt1.44□□□□□ -2.18
SSM4P40318 YGL149WYGL149W 306 nt1.44□□□□□ -2.18
SSM4P40318 YIL115W-AYIL115W-A 372 nt1.44□□□□□ -2.18
SSM4P40318 YLL020CYLL020C 306 nt1.44□□□□□ -2.18
SSM4P40318 SSS1YDR086C 243 nt1.43□□□□□ -2.18
SSM4P40318 INA22YIR024C 651 nt1.43□□□□□ -2.18
SSM4P40318 RRT15YLR162W-A 189 nt1.43□□□□□ -2.18
SSM4P40318 YNL146WYNL146W 303 nt1.43□□□□□ -2.18
SSM4P40318 PDE2YOR360C 1581 nt1.43□□□□□ -2.18
SSM4P40318 SEC21YNL287W 2808 nt1.43□□□□□ -2.18
SSM4P40318 SPT7YBR081C 3999 nt1.43□□□□□ -2.18
SSM4P40318 YJL120WYJL120W 324 nt1.42□□□□□ -2.18
SSM4P40318 YMR193C-AYMR193C-A 387 nt1.42□□□□□ -2.18
SSM4P40318 YBR221W-AYBR221W-A 105 nt1.42□□□□□ -2.18
SSM4P40318 EAF1YDR359C 2949 nt1.42□□□□□ -2.18
SSM4P40318 FIG4YNL325C 2640 nt1.42□□□□□ -2.18
SSM4P40318 YBR206WYBR206W 324 nt1.41□□□□□ -2.18
SSM4P40318 STO1YMR125W 2586 nt1.41□□□□□ -2.18
SSM4P40318 STB6YKL072W 2301 nt1.41□□□□□ -2.18
SSM4P40318 QCR9YGR183C 201 nt1.4□□□□□ -2.18
SSM4P40318 YHL042WYHL042W 453 nt1.4□□□□□ -2.18
SSM4P40318 YIL032CYIL032C 357 nt1.4□□□□□ -2.18
SSM4P40318 RPS25BYLR333C 327 nt1.4□□□□□ -2.18
SSM4P40318 YMR321CYMR321C 318 nt1.39□□□□□ -2.19
SSM4P40318 CDC39YCR093W 6327 nt1.38□□□□□ -2.19
SSM4P40318 RSM22YKL155C 1887 nt1.38□□□□□ -2.19
SSM4P40318 SPO21YOL091W 1830 nt1.38□□□□□ -2.19
SSM4P40318 YMR031W-AYMR031W-A 327 nt1.38□□□□□ -2.19
SSM4P40318 YBR200W-AYBR200W-A 165 nt1.37□□□□□ -2.19
SSM4P40318 snR60snR60 104 nt1.36□□□□□ -2.19
SSM4P40318 ALG13YGL047W 609 nt1.36□□□□□ -2.19
SSM4P40318 YNL284C-BYNL284C-B 5268 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)BtF(GAA)B 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)FtF(GAA)F 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)GtF(GAA)G 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)H1tF(GAA)H1 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)H2tF(GAA)H2 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)MtF(GAA)M 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)P1tF(GAA)P1 73 nt1.35□□□□□ -2.19
SSM4P40318 tF(GAA)P2tF(GAA)P2 73 nt1.35□□□□□ -2.19
SSM4P40318 COG8YML071C 1824 nt1.34□□□□□ -2.19
Retrieved 100 of 7,029 protein–RNA pairs in 52.9 ms