Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 MEC1YBR136W 7107 nt1.58□□□□□ -2.16
UPF3P48412 INP2YMR163C 2118 nt1.58□□□□□ -2.16
UPF3P48412 RIM20YOR275C 1986 nt1.58□□□□□ -2.16
UPF3P48412 SAC3YDR159W 3906 nt1.57□□□□□ -2.16
UPF3P48412 YLR255CYLR255C 354 nt1.57□□□□□ -2.16
UPF3P48412 RPL38YLR325C 237 nt1.57□□□□□ -2.16
UPF3P48412 YML007C-AYML007C-A 111 nt1.57□□□□□ -2.16
UPF3P48412 YMR141W-AYMR141W-A 225 nt1.57□□□□□ -2.16
UPF3P48412 YMR175W-AYMR175W-A 195 nt1.57□□□□□ -2.16
UPF3P48412 RKM1YPL208W 1752 nt1.57□□□□□ -2.16
UPF3P48412 AZF1YOR113W 2745 nt1.56□□□□□ -2.16
UPF3P48412 COA6YMR244C-A 315 nt1.56□□□□□ -2.16
UPF3P48412 SBE22YHR103W 2559 nt1.56□□□□□ -2.16
UPF3P48412 SCW11YGL028C 1629 nt1.55□□□□□ -2.16
UPF3P48412 RPS20YHL015W 366 nt1.55□□□□□ -2.16
UPF3P48412 YMR290W-AYMR290W-A 348 nt1.55□□□□□ -2.16
UPF3P48412 YOR161W-BYOR161W-B 261 nt1.55□□□□□ -2.16
UPF3P48412 YPR016W-AYPR016W-A 261 nt1.55□□□□□ -2.16
UPF3P48412 NPC2YDL046W 522 nt1.54□□□□□ -2.16
UPF3P48412 PCC1YKR095W-A 267 nt1.54□□□□□ -2.16
UPF3P48412 EST2YLR318W 2655 nt1.54□□□□□ -2.16
UPF3P48412 YDR182W-AYDR182W-A 204 nt1.53□□□□□ -2.16
UPF3P48412 ENV11YGR071C 2583 nt1.53□□□□□ -2.16
UPF3P48412 YOL160WYOL160W 342 nt1.53□□□□□ -2.16
UPF3P48412 YOR199WYOR199W 330 nt1.53□□□□□ -2.16
UPF3P48412 YBP1YBR216C 2025 nt1.52□□□□□ -2.17
UPF3P48412 YDL240C-AYDL240C-A 138 nt1.52□□□□□ -2.17
UPF3P48412 YPR002C-AYPR002C-A 198 nt1.52□□□□□ -2.17
UPF3P48412 SLI15YBR156C 2097 nt1.52□□□□□ -2.17
UPF3P48412 MAD1YGL086W 2250 nt1.51□□□□□ -2.17
UPF3P48412 SSK2YNR031C 4740 nt1.51□□□□□ -2.17
UPF3P48412 PIK1YNL267W 3201 nt1.51□□□□□ -2.17
UPF3P48412 MPT5YGL178W 2580 nt1.51□□□□□ -2.17
UPF3P48412 snR72snR72 98 nt1.51□□□□□ -2.17
UPF3P48412 CHS1YNL192W 3396 nt1.51□□□□□ -2.17
UPF3P48412 KAP122YGL016W 3246 nt1.51□□□□□ -2.17
UPF3P48412 NUT1YGL151W 3399 nt1.5□□□□□ -2.17
UPF3P48412 YDL211CYDL211C 1119 nt1.5□□□□□ -2.17
UPF3P48412 YDR426CYDR426C 378 nt1.5□□□□□ -2.17
UPF3P48412 YJL135WYJL135W 318 nt1.5□□□□□ -2.17
UPF3P48412 YSY6YBR162W-A 198 nt1.5□□□□□ -2.17
UPF3P48412 YBR174CYBR174C 315 nt1.5□□□□□ -2.17
UPF3P48412 ATG11YPR049C 3537 nt1.5□□□□□ -2.17
UPF3P48412 CCH1YGR217W 6120 nt1.49□□□□□ -2.17
UPF3P48412 YPL038W-AYPL038W-A 192 nt1.49□□□□□ -2.17
UPF3P48412 tW(UCA)QtW(UCA)Q 74 nt1.48□□□□□ -2.17
UPF3P48412 SEC3YER008C 4011 nt1.48□□□□□ -2.17
UPF3P48412 PIP2YOR363C 2991 nt1.48□□□□□ -2.17
UPF3P48412 SEC21YNL287W 2808 nt1.47□□□□□ -2.17
UPF3P48412 YIR044CYIR044C 186 nt1.47□□□□□ -2.17
UPF3P48412 YPL225WYPL225W 441 nt1.47□□□□□ -2.17
UPF3P48412 MMS4YBR098W 2076 nt1.47□□□□□ -2.17
UPF3P48412 SPT21YMR179W 2277 nt1.47□□□□□ -2.17
UPF3P48412 LCD1YDR499W 2244 nt1.47□□□□□ -2.17
UPF3P48412 SPC110YDR356W 2835 nt1.47□□□□□ -2.17
UPF3P48412 CUL3YGR003W 2235 nt1.46□□□□□ -2.18
UPF3P48412 YIL102CYIL102C 306 nt1.46□□□□□ -2.18
UPF3P48412 PET127YOR017W 2403 nt1.46□□□□□ -2.18
UPF3P48412 MSN5YDR335W 3675 nt1.45□□□□□ -2.18
UPF3P48412 POL5YEL055C 3069 nt1.45□□□□□ -2.18
UPF3P48412 RAD34YDR314C 2079 nt1.44□□□□□ -2.18
UPF3P48412 FYV8YGR196C 2454 nt1.44□□□□□ -2.18
UPF3P48412 TRM3YDL112W 4311 nt1.44□□□□□ -2.18
UPF3P48412 CLU1YMR012W 3834 nt1.43□□□□□ -2.18
UPF3P48412 COG4YPR105C 2586 nt1.43□□□□□ -2.18
UPF3P48412 PFD1YJL179W 330 nt1.43□□□□□ -2.18
UPF3P48412 YJR011CYJR011C 786 nt1.43□□□□□ -2.18
UPF3P48412 YAF9YNL107W 681 nt1.43□□□□□ -2.18
UPF3P48412 YLR419WYLR419W 4308 nt1.43□□□□□ -2.18
UPF3P48412 SWI4YER111C 3282 nt1.43□□□□□ -2.18
UPF3P48412 PKH2YOL100W 3246 nt1.43□□□□□ -2.18
UPF3P48412 PMD1YER132C 5262 nt1.43□□□□□ -2.18
UPF3P48412 YKL118WYKL118W 312 nt1.42□□□□□ -2.18
UPF3P48412 YKL136WYKL136W 399 nt1.42□□□□□ -2.18
UPF3P48412 HTB2YBL002W 396 nt1.42□□□□□ -2.18
UPF3P48412 snR14snR14 160 nt1.42□□□□□ -2.18
UPF3P48412 FIG4YNL325C 2640 nt1.42□□□□□ -2.18
UPF3P48412 NUP145YGL092W 3954 nt1.42□□□□□ -2.18
UPF3P48412 YCS4YLR272C 3531 nt1.41□□□□□ -2.18
UPF3P48412 PTP2YOR208W 2253 nt1.41□□□□□ -2.18
UPF3P48412 YDR102CYDR102C 333 nt1.41□□□□□ -2.18
UPF3P48412 CSN9YDR179C 489 nt1.41□□□□□ -2.18
UPF3P48412 GPG1YGL121C 381 nt1.41□□□□□ -2.18
UPF3P48412 RRT15YLR162W-A 189 nt1.41□□□□□ -2.18
UPF3P48412 YPR063CYPR063C 423 nt1.41□□□□□ -2.18
UPF3P48412 HKR1YDR420W 5409 nt1.41□□□□□ -2.18
UPF3P48412 RSM22YKL155C 1887 nt1.4□□□□□ -2.19
UPF3P48412 tQ(UUG)E2tQ(UUG)E2 72 nt1.4□□□□□ -2.19
UPF3P48412 YHR007C-AYHR007C-A 216 nt1.4□□□□□ -2.19
UPF3P48412 MAM33YIL070C 801 nt1.4□□□□□ -2.19
UPF3P48412 YLL020CYLL020C 306 nt1.4□□□□□ -2.19
UPF3P48412 CDC31YOR257W 486 nt1.4□□□□□ -2.19
UPF3P48412 APL3YBL037W 3078 nt1.38□□□□□ -2.19
UPF3P48412 RPL35AYDL191W 363 nt1.38□□□□□ -2.19
UPF3P48412 ALY2YJL084C 3141 nt1.38□□□□□ -2.19
UPF3P48412 CAT8YMR280C 4302 nt1.38□□□□□ -2.19
UPF3P48412 NHP2YDL208W 471 nt1.37□□□□□ -2.19
UPF3P48412 PBY1YBR094W 2262 nt1.37□□□□□ -2.19
UPF3P48412 NUP188YML103C 4968 nt1.37□□□□□ -2.19
UPF3P48412 SMC1YFL008W 3678 nt1.36□□□□□ -2.19
Retrieved 100 of 7,029 protein–RNA pairs in 31.3 ms