Protein–RNA interactions for Protein: P53549

RPT4, 26S proteasome subunit RPT4, yeastyeast

Known RBP Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPT4P53549 YLR146W-AYLR146W-A 189 nt1.58□□□□□ -2.16
RPT4P53549 YMR230W-AYMR230W-A 189 nt1.58□□□□□ -2.16
RPT4P53549 TTI1YKL033W 3117 nt1.58□□□□□ -2.16
RPT4P53549 ZIP1YDR285W 2628 nt1.58□□□□□ -2.16
RPT4P53549 CCH1YGR217W 6120 nt1.57□□□□□ -2.16
RPT4P53549 ADR1YDR216W 3972 nt1.57□□□□□ -2.16
RPT4P53549 YOR019WYOR019W 2193 nt1.57□□□□□ -2.16
RPT4P53549 YDL011CYDL011C 324 nt1.57□□□□□ -2.16
RPT4P53549 YAR047CYAR047C 321 nt1.57□□□□□ -2.16
RPT4P53549 YOP1YPR028W 543 nt1.57□□□□□ -2.16
RPT4P53549 SPO24YPR036W-A 204 nt1.57□□□□□ -2.16
RPT4P53549 SWI6YLR182W 2412 nt1.57□□□□□ -2.16
RPT4P53549 CDC25YLR310C 4770 nt1.56□□□□□ -2.16
RPT4P53549 PXA2YKL188C 2562 nt1.56□□□□□ -2.16
RPT4P53549 YDR003W-AYDR003W-A 123 nt1.56□□□□□ -2.16
RPT4P53549 YML003WYML003W 873 nt1.56□□□□□ -2.16
RPT4P53549 YOL159CYOL159C 516 nt1.56□□□□□ -2.16
RPT4P53549 HHT1YBR010W 411 nt1.56□□□□□ -2.16
RPT4P53549 SSK2YNR031C 4740 nt1.56□□□□□ -2.16
RPT4P53549 YLR422WYLR422W 5799 nt1.56□□□□□ -2.16
RPT4P53549 LYS14YDR034C 2373 nt1.55□□□□□ -2.16
RPT4P53549 YJL020W-AYJL020W-A 258 nt1.55□□□□□ -2.16
RPT4P53549 RPL9BYNL067W 576 nt1.55□□□□□ -2.16
RPT4P53549 HCH1YNL281W 462 nt1.55□□□□□ -2.16
RPT4P53549 IML1YJR138W 4755 nt1.54□□□□□ -2.16
RPT4P53549 YLR419WYLR419W 4308 nt1.54□□□□□ -2.16
RPT4P53549 YGR109W-BYGR109W-B 4644 nt1.54□□□□□ -2.16
RPT4P53549 SRP14YDL092W 441 nt1.54□□□□□ -2.16
RPT4P53549 SWF1YDR126W 1011 nt1.54□□□□□ -2.16
RPT4P53549 YER079WYER079W 633 nt1.54□□□□□ -2.16
RPT4P53549 RTR1YER139C 681 nt1.54□□□□□ -2.16
RPT4P53549 YMR001C-AYMR001C-A 231 nt1.54□□□□□ -2.16
RPT4P53549 RRT1YBL048W 312 nt1.54□□□□□ -2.16
RPT4P53549 PAC1YOR269W 1485 nt1.54□□□□□ -2.16
RPT4P53549 SPO23YBR250W 1572 nt1.54□□□□□ -2.16
RPT4P53549 YIL059CYIL059C 366 nt1.53□□□□□ -2.16
RPT4P53549 YKL083WYKL083W 615 nt1.53□□□□□ -2.16
RPT4P53549 YKL202WYKL202W 582 nt1.53□□□□□ -2.16
RPT4P53549 YLR434CYLR434C 384 nt1.53□□□□□ -2.16
RPT4P53549 YPL185WYPL185W 396 nt1.53□□□□□ -2.16
RPT4P53549 MLH3YPL164C 2148 nt1.52□□□□□ -2.17
RPT4P53549 PCF11YDR228C 1881 nt1.52□□□□□ -2.17
RPT4P53549 AIM9YER080W 1884 nt1.52□□□□□ -2.17
RPT4P53549 YDR269CYDR269C 324 nt1.52□□□□□ -2.17
RPT4P53549 EFR3YMR212C 2349 nt1.52□□□□□ -2.17
RPT4P53549 YAP6YDR259C 1152 nt1.51□□□□□ -2.17
RPT4P53549 RPL26AYLR344W 384 nt1.51□□□□□ -2.17
RPT4P53549 LEE1YPL054W 906 nt1.51□□□□□ -2.17
RPT4P53549 YBR285WYBR285W 435 nt1.51□□□□□ -2.17
RPT4P53549 IRA1YBR140C 9279 nt1.51□□□□□ -2.17
RPT4P53549 PAU2YEL049W 363 nt1.5□□□□□ -2.17
RPT4P53549 tQ(UUG)E2tQ(UUG)E2 72 nt1.5□□□□□ -2.17
RPT4P53549 HIT1YJR055W 495 nt1.5□□□□□ -2.17
RPT4P53549 YLR154W-FYLR154W-F 141 nt1.5□□□□□ -2.17
RPT4P53549 YOR053WYOR053W 342 nt1.5□□□□□ -2.17
RPT4P53549 YPL229WYPL229W 621 nt1.5□□□□□ -2.17
RPT4P53549 BST1YFL025C 3090 nt1.5□□□□□ -2.17
RPT4P53549 DGR2YKL121W 2559 nt1.5□□□□□ -2.17
RPT4P53549 RKM1YPL208W 1752 nt1.49□□□□□ -2.17
RPT4P53549 SXM1YDR395W 2835 nt1.49□□□□□ -2.17
RPT4P53549 RFX1YLR176C 2436 nt1.49□□□□□ -2.17
RPT4P53549 SMC4YLR086W 4257 nt1.49□□□□□ -2.17
RPT4P53549 CYC7YEL039C 342 nt1.49□□□□□ -2.17
RPT4P53549 YHR138CYHR138C 345 nt1.49□□□□□ -2.17
RPT4P53549 EMC5YIL027C 426 nt1.49□□□□□ -2.17
RPT4P53549 COF1YLL050C 432 nt1.49□□□□□ -2.17
RPT4P53549 YBR174CYBR174C 315 nt1.49□□□□□ -2.17
RPT4P53549 NCA2YPR155C 1851 nt1.49□□□□□ -2.17
RPT4P53549 SEC5YDR166C 2916 nt1.49□□□□□ -2.17
RPT4P53549 ALK1YGL021W 2283 nt1.49□□□□□ -2.17
RPT4P53549 YJL022WYJL022W 309 nt1.48□□□□□ -2.17
RPT4P53549 ISF1YMR081C 1017 nt1.48□□□□□ -2.17
RPT4P53549 KAP122YGL016W 3246 nt1.47□□□□□ -2.17
RPT4P53549 YOR376WYOR376W 369 nt1.47□□□□□ -2.17
RPT4P53549 YLL032CYLL032C 2478 nt1.47□□□□□ -2.17
RPT4P53549 SLY1YDR189W 2001 nt1.47□□□□□ -2.17
RPT4P53549 RAD50YNL250W 3939 nt1.47□□□□□ -2.17
RPT4P53549 PIG1YLR273C 1947 nt1.46□□□□□ -2.18
RPT4P53549 POL5YEL055C 3069 nt1.46□□□□□ -2.18
RPT4P53549 MVP1YMR004W 1536 nt1.46□□□□□ -2.18
RPT4P53549 SPC110YDR356W 2835 nt1.46□□□□□ -2.18
RPT4P53549 TRM732YMR259C 4263 nt1.46□□□□□ -2.18
RPT4P53549 YGR174W-AYGR174W-A 87 nt1.46□□□□□ -2.18
RPT4P53549 YLR140WYLR140W 327 nt1.46□□□□□ -2.18
RPT4P53549 YMR141W-AYMR141W-A 225 nt1.46□□□□□ -2.18
RPT4P53549 PIK1YNL267W 3201 nt1.46□□□□□ -2.18
RPT4P53549 UFD2YDL190C 2886 nt1.45□□□□□ -2.18
RPT4P53549 YDR169C-AYDR169C-A 150 nt1.45□□□□□ -2.18
RPT4P53549 BSC3YLR465C 309 nt1.45□□□□□ -2.18
RPT4P53549 SPC98YNL126W 2541 nt1.44□□□□□ -2.18
RPT4P53549 SAS3YBL052C 2496 nt1.44□□□□□ -2.18
RPT4P53549 YGL217CYGL217C 342 nt1.44□□□□□ -2.18
RPT4P53549 VPS55YJR044C 423 nt1.44□□□□□ -2.18
RPT4P53549 MRPL31YKL138C 396 nt1.44□□□□□ -2.18
RPT4P53549 RPL40BYKR094C 387 nt1.44□□□□□ -2.18
RPT4P53549 AI5_ALPHAQ0070 1893 nt1.43□□□□□ -2.18
RPT4P53549 YDR157WYDR157W 402 nt1.43□□□□□ -2.18
RPT4P53549 YFL019CYFL019C 354 nt1.43□□□□□ -2.18
RPT4P53549 UPS1YLR193C 528 nt1.43□□□□□ -2.18
RPT4P53549 TIM18YOR297C 579 nt1.43□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 64.6 ms