Protein–RNA interactions for Protein: P39967

UBP9, Ubiquitin carboxyl-terminal hydrolase 9, yeastyeast

Predictions only

Length 754 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP9P39967 BOI1YBL085W 2943 nt3.96□□□□□ -1.78
UBP9P39967 FAP7YDL166C 594 nt3.96□□□□□ -1.78
UBP9P39967 tC(GCA)BtC(GCA)B 72 nt3.96□□□□□ -1.78
UBP9P39967 tC(GCA)GtC(GCA)G 72 nt3.96□□□□□ -1.78
UBP9P39967 tC(GCA)P1tC(GCA)P1 72 nt3.96□□□□□ -1.78
UBP9P39967 tC(GCA)P2tC(GCA)P2 72 nt3.96□□□□□ -1.78
UBP9P39967 YGR146C-AYGR146C-A 162 nt3.96□□□□□ -1.78
UBP9P39967 21S_rRNA21S_rRNA 3296 nt3.96□□□□□ -1.78
UBP9P39967 YDR089WYDR089W 2610 nt3.96□□□□□ -1.78
UBP9P39967 ZDS1YMR273C 2748 nt3.95□□□□□ -1.78
UBP9P39967 PWP2YCR057C 2772 nt3.95□□□□□ -1.78
UBP9P39967 PTP2YOR208W 2253 nt3.95□□□□□ -1.78
UBP9P39967 YKU80YMR106C 1890 nt3.95□□□□□ -1.78
UBP9P39967 YBR141W-AYBR141W-A 96 nt3.95□□□□□ -1.78
UBP9P39967 SPT23YKL020C 3249 nt3.95□□□□□ -1.78
UBP9P39967 NUP133YKR082W 3474 nt3.95□□□□□ -1.78
UBP9P39967 RAD2YGR258C 3096 nt3.95□□□□□ -1.78
UBP9P39967 POL1YNL102W 4407 nt3.94□□□□□ -1.78
UBP9P39967 SIP4YJL089W 2490 nt3.94□□□□□ -1.78
UBP9P39967 YHR073W-AYHR073W-A 177 nt3.93□□□□□ -1.78
UBP9P39967 ISW2YOR304W 3363 nt3.93□□□□□ -1.78
UBP9P39967 WAR1YML076C 2835 nt3.92□□□□□ -1.78
UBP9P39967 SLI15YBR156C 2097 nt3.92□□□□□ -1.78
UBP9P39967 PAU10YDR542W 363 nt3.92□□□□□ -1.78
UBP9P39967 PAU4YLR461W 363 nt3.92□□□□□ -1.78
UBP9P39967 MDM1YML104C 3384 nt3.91□□□□□ -1.78
UBP9P39967 SRO7YPR032W 3102 nt3.91□□□□□ -1.78
UBP9P39967 SNC1YAL030W 354 nt3.91□□□□□ -1.78
UBP9P39967 RSM22YKL155C 1887 nt3.91□□□□□ -1.78
UBP9P39967 NAM7YMR080C 2916 nt3.91□□□□□ -1.78
UBP9P39967 SPO24YPR036W-A 204 nt3.91□□□□□ -1.78
UBP9P39967 ANB1YJR047C 474 nt3.9□□□□□ -1.79
UBP9P39967 RPS12YOR369C 432 nt3.9□□□□□ -1.79
UBP9P39967 AKR1YDR264C 2295 nt3.9□□□□□ -1.79
UBP9P39967 CIN1YOR349W 3045 nt3.89□□□□□ -1.79
UBP9P39967 BCK2YER167W 2556 nt3.89□□□□□ -1.79
UBP9P39967 SFB2YNL049C 2631 nt3.89□□□□□ -1.79
UBP9P39967 YMR31YFR049W 372 nt3.89□□□□□ -1.79
UBP9P39967 SPT4YGR063C 309 nt3.89□□□□□ -1.79
UBP9P39967 YKL050CYKL050C 2769 nt3.89□□□□□ -1.79
UBP9P39967 FUN30YAL019W 3396 nt3.88□□□□□ -1.79
UBP9P39967 RPS29AYLR388W 171 nt3.88□□□□□ -1.79
UBP9P39967 APE2YKL157W 2859 nt3.87□□□□□ -1.79
UBP9P39967 YMR122W-AYMR122W-A 255 nt3.87□□□□□ -1.79
UBP9P39967 YJR039WYJR039W 3366 nt3.87□□□□□ -1.79
UBP9P39967 MGM1YOR211C 2646 nt3.86□□□□□ -1.79
UBP9P39967 TRS120YDR407C 3870 nt3.86□□□□□ -1.79
UBP9P39967 NEW1YPL226W 3591 nt3.86□□□□□ -1.79
UBP9P39967 ULS1YOR191W 4860 nt3.86□□□□□ -1.79
UBP9P39967 ZDS2YML109W 2829 nt3.85□□□□□ -1.79
UBP9P39967 CRS5YOR031W 210 nt3.85□□□□□ -1.79
UBP9P39967 NIP1YMR309C 2439 nt3.85□□□□□ -1.79
UBP9P39967 MTR4YJL050W 3222 nt3.84□□□□□ -1.79
UBP9P39967 MSH2YOL090W 2895 nt3.83□□□□□ -1.8
UBP9P39967 YDL025W-AYDL025W-A 105 nt3.83□□□□□ -1.8
UBP9P39967 RPL37BYDR500C 267 nt3.83□□□□□ -1.8
UBP9P39967 TIM9YEL020W-A 264 nt3.83□□□□□ -1.8
UBP9P39967 TRK1YJL129C 3708 nt3.83□□□□□ -1.8
UBP9P39967 SMT3YDR510W 306 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)DtK(UUU)D 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)G1tK(UUU)G1 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)G2tK(UUU)G2 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)KtK(UUU)K 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)LtK(UUU)L 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)OtK(UUU)O 73 nt3.82□□□□□ -1.8
UBP9P39967 tK(UUU)PtK(UUU)P 73 nt3.82□□□□□ -1.8
UBP9P39967 YGL014C-AYGL014C-A 162 nt3.82□□□□□ -1.8
UBP9P39967 SEC10YLR166C 2616 nt3.81□□□□□ -1.8
UBP9P39967 NAT1YDL040C 2565 nt3.81□□□□□ -1.8
UBP9P39967 RPO31YOR116C 4383 nt3.81□□□□□ -1.8
UBP9P39967 SCD5YOR329C 2619 nt3.8□□□□□ -1.8
UBP9P39967 TRL1YJL087C 2484 nt3.8□□□□□ -1.8
UBP9P39967 YMR242W-AYMR242W-A 90 nt3.8□□□□□ -1.8
UBP9P39967 NUP157YER105C 4176 nt3.8□□□□□ -1.8
UBP9P39967 SPT16YGL207W 3108 nt3.8□□□□□ -1.8
UBP9P39967 GSC2YGR032W 5688 nt3.8□□□□□ -1.8
UBP9P39967 ALA1YOR335C 2877 nt3.8□□□□□ -1.8
UBP9P39967 KRE5YOR336W 4098 nt3.8□□□□□ -1.8
UBP9P39967 PET127YOR017W 2403 nt3.79□□□□□ -1.8
UBP9P39967 RPL41AYDL184C 78 nt3.79□□□□□ -1.8
UBP9P39967 YAL064W-BYAL064W-B 381 nt3.79□□□□□ -1.8
UBP9P39967 UBP15YMR304W 3693 nt3.79□□□□□ -1.8
UBP9P39967 ISM1YPL040C 3009 nt3.78□□□□□ -1.8
UBP9P39967 snR76snR76 109 nt3.78□□□□□ -1.8
UBP9P39967 PHO81YGR233C 3537 nt3.78□□□□□ -1.8
UBP9P39967 MNL2YLR057W 2550 nt3.78□□□□□ -1.8
UBP9P39967 COG4YPR105C 2586 nt3.78□□□□□ -1.8
UBP9P39967 YGR027W-BYGR027W-B 5268 nt3.78□□□□□ -1.81
UBP9P39967 YLR227W-BYLR227W-B 5268 nt3.78□□□□□ -1.81
UBP9P39967 YPR158C-DYPR158C-D 5268 nt3.78□□□□□ -1.81
UBP9P39967 PAU18YLL064C 363 nt3.77□□□□□ -1.81
UBP9P39967 PAU6YNR076W 363 nt3.77□□□□□ -1.81
UBP9P39967 TAF1YGR274C 3201 nt3.77□□□□□ -1.81
UBP9P39967 EMC1YCL045C 2283 nt3.77□□□□□ -1.81
UBP9P39967 CHS2YBR038W 2892 nt3.77□□□□□ -1.81
UBP9P39967 RTP1YMR185W 2946 nt3.76□□□□□ -1.81
UBP9P39967 AFI1YOR129C 2682 nt3.76□□□□□ -1.81
UBP9P39967 YGL123C-AYGL123C-A 231 nt3.76□□□□□ -1.81
UBP9P39967 PHO91YNR013C 2685 nt3.76□□□□□ -1.81
UBP9P39967 OSH3YHR073W 2991 nt3.75□□□□□ -1.81
Retrieved 100 of 7,029 protein–RNA pairs in 16.9 ms