Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YJR029WYJR029W 5268 nt0.95□□□□□ -2.26
CUP9P41817 YPR137C-BYPR137C-B 5268 nt0.95□□□□□ -2.26
CUP9P41817 YDL068WYDL068W 330 nt0.94□□□□□ -2.26
CUP9P41817 MPC1YGL080W 393 nt0.94□□□□□ -2.26
CUP9P41817 LSO2YGR169C-A 279 nt0.94□□□□□ -2.26
CUP9P41817 YLR366WYLR366W 306 nt0.94□□□□□ -2.26
CUP9P41817 CGI121YML036W 546 nt0.94□□□□□ -2.26
CUP9P41817 MRPS8YMR158W 468 nt0.94□□□□□ -2.26
CUP9P41817 VAM3YOR106W 852 nt0.94□□□□□ -2.26
CUP9P41817 YPL080CYPL080C 327 nt0.94□□□□□ -2.26
CUP9P41817 YPR172WYPR172W 603 nt0.94□□□□□ -2.26
CUP9P41817 YAR009CYAR009C 3591 nt0.94□□□□□ -2.26
CUP9P41817 PEP3YLR148W 2757 nt0.94□□□□□ -2.26
CUP9P41817 AZF1YOR113W 2745 nt0.93□□□□□ -2.26
CUP9P41817 SPC2YML055W 537 nt0.93□□□□□ -2.26
CUP9P41817 HHT1YBR010W 411 nt0.93□□□□□ -2.26
CUP9P41817 RPS30BYOR182C 192 nt0.93□□□□□ -2.26
CUP9P41817 SGD1YLR336C 2700 nt0.93□□□□□ -2.26
CUP9P41817 YHR214C-CYHR214C-C 1437 nt0.92□□□□□ -2.26
CUP9P41817 EMC5YIL027C 426 nt0.92□□□□□ -2.26
CUP9P41817 YMR304C-AYMR304C-A 351 nt0.92□□□□□ -2.26
CUP9P41817 SMY1YKL079W 1971 nt0.91□□□□□ -2.26
CUP9P41817 YJL119CYJL119C 324 nt0.91□□□□□ -2.26
CUP9P41817 YKL183C-AYKL183C-A 213 nt0.91□□□□□ -2.26
CUP9P41817 CTK3YML112W 891 nt0.91□□□□□ -2.26
CUP9P41817 YMR242W-AYMR242W-A 90 nt0.91□□□□□ -2.26
CUP9P41817 YPR170CYPR170C 336 nt0.91□□□□□ -2.26
CUP9P41817 KAR3YPR141C 2190 nt0.91□□□□□ -2.26
CUP9P41817 SNF5YBR289W 2718 nt0.91□□□□□ -2.26
CUP9P41817 OSH6YKR003W 1347 nt0.9□□□□□ -2.26
CUP9P41817 NUP188YML103C 4968 nt0.9□□□□□ -2.27
CUP9P41817 TMA22YJR014W 597 nt0.9□□□□□ -2.27
CUP9P41817 YNL150WYNL150W 408 nt0.9□□□□□ -2.27
CUP9P41817 YOL038C-AYOL038C-A 96 nt0.9□□□□□ -2.27
CUP9P41817 YPR063CYPR063C 423 nt0.9□□□□□ -2.27
CUP9P41817 ROM2YLR371W 4071 nt0.9□□□□□ -2.27
CUP9P41817 UFD2YDL190C 2886 nt0.89□□□□□ -2.27
CUP9P41817 BEM2YER155C 6504 nt0.89□□□□□ -2.27
CUP9P41817 YDR461C-AYDR461C-A 243 nt0.89□□□□□ -2.27
CUP9P41817 IES5YER092W 378 nt0.89□□□□□ -2.27
CUP9P41817 TAD1YGL243W 1203 nt0.89□□□□□ -2.27
CUP9P41817 FSH1YHR049W 732 nt0.89□□□□□ -2.27
CUP9P41817 RPL40BYKR094C 387 nt0.89□□□□□ -2.27
CUP9P41817 YOR376WYOR376W 369 nt0.89□□□□□ -2.27
CUP9P41817 FMP23YBR047W 528 nt0.89□□□□□ -2.27
CUP9P41817 REF2YDR195W 1602 nt0.89□□□□□ -2.27
CUP9P41817 BUD3YCL014W 4911 nt0.89□□□□□ -2.27
CUP9P41817 DOP1YDR141C 5097 nt0.88□□□□□ -2.27
CUP9P41817 VPS54YDR027C 2670 nt0.88□□□□□ -2.27
CUP9P41817 RRI2YOL117W 1938 nt0.88□□□□□ -2.27
CUP9P41817 YDL211CYDL211C 1119 nt0.88□□□□□ -2.27
CUP9P41817 YHL009W-AYHL009W-A 1242 nt0.88□□□□□ -2.27
CUP9P41817 UBP3YER151C 2739 nt0.87□□□□□ -2.27
CUP9P41817 ZRG17YNR039C 1818 nt0.87□□□□□ -2.27
CUP9P41817 SEC5YDR166C 2916 nt0.87□□□□□ -2.27
CUP9P41817 EMT1tM(CAU)D 73 nt0.87□□□□□ -2.27
CUP9P41817 EMT5tM(CAU)J1 73 nt0.87□□□□□ -2.27
CUP9P41817 EMT3tM(CAU)J2 73 nt0.87□□□□□ -2.27
CUP9P41817 EMT4tM(CAU)M 73 nt0.87□□□□□ -2.27
CUP9P41817 EMT2tM(CAU)O2 73 nt0.87□□□□□ -2.27
CUP9P41817 YGL230CYGL230C 444 nt0.87□□□□□ -2.27
CUP9P41817 YHR054CYHR054C 1065 nt0.87□□□□□ -2.27
CUP9P41817 INA22YIR024C 651 nt0.87□□□□□ -2.27
CUP9P41817 RPL37AYLR185W 267 nt0.87□□□□□ -2.27
CUP9P41817 YNL114CYNL114C 372 nt0.87□□□□□ -2.27
CUP9P41817 ATP20YPR020W 348 nt0.87□□□□□ -2.27
CUP9P41817 YPR146CYPR146C 330 nt0.87□□□□□ -2.27
CUP9P41817 SCC2YDR180W 4482 nt0.87□□□□□ -2.27
CUP9P41817 YDR261W-AYDR261W-A 1317 nt0.87□□□□□ -2.27
CUP9P41817 EAF1YDR359C 2949 nt0.86□□□□□ -2.27
CUP9P41817 YGR265WYGR265W 411 nt0.86□□□□□ -2.27
CUP9P41817 CRG1YHR209W 876 nt0.86□□□□□ -2.27
CUP9P41817 RCN1YKL159C 636 nt0.86□□□□□ -2.27
CUP9P41817 YPT6YLR262C 648 nt0.86□□□□□ -2.27
CUP9P41817 POP7YBR167C 423 nt0.86□□□□□ -2.27
CUP9P41817 SEM1YDR363W-A 270 nt0.85□□□□□ -2.27
CUP9P41817 OST1YJL002C 1431 nt0.85□□□□□ -2.27
CUP9P41817 YCL046WYCL046W 324 nt0.85□□□□□ -2.27
CUP9P41817 VPS52YDR484W 1926 nt0.85□□□□□ -2.27
CUP9P41817 MUK1YPL070W 1839 nt0.85□□□□□ -2.27
CUP9P41817 YBR184WYBR184W 1572 nt0.84□□□□□ -2.27
CUP9P41817 YGL217CYGL217C 342 nt0.84□□□□□ -2.27
CUP9P41817 YGR115CYGR115C 780 nt0.84□□□□□ -2.27
CUP9P41817 YLL020CYLL020C 306 nt0.84□□□□□ -2.27
CUP9P41817 YMR013C-AYMR013C-A 150 nt0.84□□□□□ -2.27
CUP9P41817 TIM18YOR297C 579 nt0.84□□□□□ -2.27
CUP9P41817 SPR3YGR059W 1539 nt0.84□□□□□ -2.28
CUP9P41817 YCS4YLR272C 3531 nt0.84□□□□□ -2.28
CUP9P41817 CDC39YCR093W 6327 nt0.83□□□□□ -2.28
CUP9P41817 RAD50YNL250W 3939 nt0.83□□□□□ -2.28
CUP9P41817 YGL109WYGL109W 324 nt0.83□□□□□ -2.28
CUP9P41817 SPC1YJR010C-A 285 nt0.83□□□□□ -2.28
CUP9P41817 PAU18YLL064C 363 nt0.83□□□□□ -2.28
CUP9P41817 YBL073WYBL073W 312 nt0.83□□□□□ -2.28
CUP9P41817 PAU6YNR076W 363 nt0.83□□□□□ -2.28
CUP9P41817 MSS11YMR164C 2277 nt0.83□□□□□ -2.28
CUP9P41817 RTR1YER139C 681 nt0.82□□□□□ -2.28
CUP9P41817 RPL42BYHR141C 321 nt0.82□□□□□ -2.28
CUP9P41817 DDR48YMR173W 1293 nt0.82□□□□□ -2.28
CUP9P41817 RPL42AYNL162W 321 nt0.82□□□□□ -2.28
Retrieved 100 of 7,029 protein–RNA pairs in 55.3 ms