Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
LSM1O15116 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.52■□□□□ 0.72
LSM1O15116 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.52■□□□□ 0.72
LSM1O15116 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.52■□□□□ 0.72
LSM1O15116 KRT18P61-201ENST00000585825 1298 ntBASIC19.52■□□□□ 0.72
LSM1O15116 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.52■□□□□ 0.72
LSM1O15116 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.52■□□□□ 0.72
LSM1O15116 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LSM1O15116 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.52■□□□□ 0.72
LSM1O15116 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LSM1O15116 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.71
LSM1O15116 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.52■□□□□ 0.71
LSM1O15116 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.51■□□□□ 0.71
LSM1O15116 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
LSM1O15116 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.51■□□□□ 0.71
LSM1O15116 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.51■□□□□ 0.71
LSM1O15116 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.51■□□□□ 0.71
LSM1O15116 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LSM1O15116 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.51■□□□□ 0.71
LSM1O15116 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.5■□□□□ 0.71
LSM1O15116 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.5■□□□□ 0.71
LSM1O15116 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.5■□□□□ 0.71
LSM1O15116 ZNRF2P3-201ENST00000424200 374 ntBASIC19.5■□□□□ 0.71
LSM1O15116 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.5■□□□□ 0.71
LSM1O15116 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.5■□□□□ 0.71
LSM1O15116 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LSM1O15116 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.5■□□□□ 0.71
LSM1O15116 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
LSM1O15116 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.49■□□□□ 0.71
LSM1O15116 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.49■□□□□ 0.71
LSM1O15116 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 KRT19P1-201ENST00000405746 1186 ntBASIC19.49■□□□□ 0.71
LSM1O15116 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.49■□□□□ 0.71
LSM1O15116 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.49■□□□□ 0.71
LSM1O15116 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LSM1O15116 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.49■□□□□ 0.71
LSM1O15116 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms