Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YMR247W-AYMR247W-A 144 nt1.68□□□□□ -2.14
CDC40P40968 SPC29YPL124W 762 nt1.68□□□□□ -2.14
CDC40P40968 DFG16YOR030W 1860 nt1.68□□□□□ -2.14
CDC40P40968 SET2YJL168C 2202 nt1.68□□□□□ -2.14
CDC40P40968 MNL2YLR057W 2550 nt1.68□□□□□ -2.14
CDC40P40968 LRE1YCL051W 1752 nt1.67□□□□□ -2.14
CDC40P40968 YJR039WYJR039W 3366 nt1.67□□□□□ -2.14
CDC40P40968 MDM32YOR147W 1869 nt1.67□□□□□ -2.14
CDC40P40968 RTR2YDR066C 591 nt1.67□□□□□ -2.14
CDC40P40968 YDR220CYDR220C 294 nt1.67□□□□□ -2.14
CDC40P40968 YGL069CYGL069C 465 nt1.67□□□□□ -2.14
CDC40P40968 CYB5YNL111C 363 nt1.67□□□□□ -2.14
CDC40P40968 ROX1YPR065W 1107 nt1.67□□□□□ -2.14
CDC40P40968 NEO1YIL048W 3456 nt1.67□□□□□ -2.14
CDC40P40968 VPS35YJL154C 2835 nt1.67□□□□□ -2.14
CDC40P40968 VPS41YDR080W 2979 nt1.66□□□□□ -2.14
CDC40P40968 SLN1YIL147C 3663 nt1.66□□□□□ -2.14
CDC40P40968 YDR042CYDR042C 603 nt1.66□□□□□ -2.14
CDC40P40968 tT(UGU)HtT(UGU)H 72 nt1.66□□□□□ -2.14
CDC40P40968 AIM19YIL087C 474 nt1.66□□□□□ -2.14
CDC40P40968 CMS1YLR003C 876 nt1.66□□□□□ -2.14
CDC40P40968 CMC2YBL059C-A 330 nt1.66□□□□□ -2.14
CDC40P40968 DGK1YOR311C 873 nt1.66□□□□□ -2.14
CDC40P40968 NOT5YPR072W 1683 nt1.66□□□□□ -2.14
CDC40P40968 ARP7YPR034W 1434 nt1.66□□□□□ -2.14
CDC40P40968 AGC1YPR021C 2709 nt1.65□□□□□ -2.15
CDC40P40968 SNF5YBR289W 2718 nt1.65□□□□□ -2.15
CDC40P40968 PLC1YPL268W 2610 nt1.65□□□□□ -2.15
CDC40P40968 CHZ1YER030W 462 nt1.65□□□□□ -2.15
CDC40P40968 LSO2YGR169C-A 279 nt1.65□□□□□ -2.15
CDC40P40968 YBL108WYBL108W 306 nt1.65□□□□□ -2.15
CDC40P40968 SIR4YDR227W 4077 nt1.65□□□□□ -2.15
CDC40P40968 PEP1YBL017C 4740 nt1.65□□□□□ -2.15
CDC40P40968 YCR102W-AYCR102W-A 198 nt1.64□□□□□ -2.15
CDC40P40968 YDL187CYDL187C 330 nt1.64□□□□□ -2.15
CDC40P40968 VMA21YGR105W 234 nt1.64□□□□□ -2.15
CDC40P40968 TIM10YHR005C-A 282 nt1.64□□□□□ -2.15
CDC40P40968 SPO13YHR014W 876 nt1.64□□□□□ -2.15
CDC40P40968 LRP1YHR081W 555 nt1.64□□□□□ -2.15
CDC40P40968 YIR020CYIR020C 303 nt1.64□□□□□ -2.15
CDC40P40968 BUD19YJL188C 309 nt1.64□□□□□ -2.15
CDC40P40968 YLR271WYLR271W 825 nt1.64□□□□□ -2.15
CDC40P40968 YMR324CYMR324C 243 nt1.64□□□□□ -2.15
CDC40P40968 RPB11YOL005C 363 nt1.64□□□□□ -2.15
CDC40P40968 YPL197CYPL197C 414 nt1.64□□□□□ -2.15
CDC40P40968 GPX2YBR244W 489 nt1.64□□□□□ -2.15
CDC40P40968 SEC63YOR254C 1992 nt1.64□□□□□ -2.15
CDC40P40968 UTP13YLR222C 2454 nt1.64□□□□□ -2.15
CDC40P40968 IRE1YHR079C 3348 nt1.64□□□□□ -2.15
CDC40P40968 YJL016WYJL016W 1686 nt1.64□□□□□ -2.15
CDC40P40968 YJR140W-AYJR140W-A 150 nt1.63□□□□□ -2.15
CDC40P40968 PSY1YKL076C 384 nt1.63□□□□□ -2.15
CDC40P40968 YKL111CYKL111C 336 nt1.63□□□□□ -2.15
CDC40P40968 YDR210W-AYDR210W-A 1317 nt1.63□□□□□ -2.15
CDC40P40968 YOR343W-AYOR343W-A 1317 nt1.63□□□□□ -2.15
CDC40P40968 PKH3YDR466W 2697 nt1.63□□□□□ -2.15
CDC40P40968 SAP190YKR028W 3102 nt1.62□□□□□ -2.15
CDC40P40968 YFL012W-AYFL012W-A 375 nt1.62□□□□□ -2.15
CDC40P40968 YKL023C-AYKL023C-A 228 nt1.62□□□□□ -2.15
CDC40P40968 YLR252WYLR252W 306 nt1.62□□□□□ -2.15
CDC40P40968 SEC22YLR268W 645 nt1.62□□□□□ -2.15
CDC40P40968 KAR3YPR141C 2190 nt1.62□□□□□ -2.15
CDC40P40968 IRC10YOL015W 1761 nt1.62□□□□□ -2.15
CDC40P40968 SLM1YIL105C 2061 nt1.62□□□□□ -2.15
CDC40P40968 NCE101YJL205C 162 nt1.61□□□□□ -2.15
CDC40P40968 AFB1YLR040C 675 nt1.61□□□□□ -2.15
CDC40P40968 YBL012CYBL012C 402 nt1.61□□□□□ -2.15
CDC40P40968 MF(ALPHA)1YPL187W 498 nt1.61□□□□□ -2.15
CDC40P40968 SAR1YPL218W 573 nt1.61□□□□□ -2.15
CDC40P40968 YPR147CYPR147C 915 nt1.61□□□□□ -2.15
CDC40P40968 SGD1YLR336C 2700 nt1.61□□□□□ -2.15
CDC40P40968 LYS9YNR050C 1341 nt1.61□□□□□ -2.15
CDC40P40968 ZRG8YER033C 3231 nt1.61□□□□□ -2.15
CDC40P40968 YLR035C-AYLR035C-A 3468 nt1.6□□□□□ -2.15
CDC40P40968 YHR210CYHR210C 1026 nt1.6□□□□□ -2.15
CDC40P40968 PAU14YIL176C 363 nt1.6□□□□□ -2.15
CDC40P40968 PAU1YJL223C 363 nt1.6□□□□□ -2.15
CDC40P40968 YBL083CYBL083C 426 nt1.6□□□□□ -2.15
CDC40P40968 RBL2YOR265W 321 nt1.6□□□□□ -2.15
CDC40P40968 YBR224WYBR224W 516 nt1.6□□□□□ -2.15
CDC40P40968 APL5YPL195W 2799 nt1.6□□□□□ -2.15
CDC40P40968 SEY1YOR165W 2331 nt1.6□□□□□ -2.15
CDC40P40968 MON2YNL297C 4911 nt1.59□□□□□ -2.15
CDC40P40968 RPL31AYDL075W 342 nt1.59□□□□□ -2.15
CDC40P40968 GMC2YLR445W 567 nt1.59□□□□□ -2.15
CDC40P40968 COX7YMR256C 183 nt1.59□□□□□ -2.15
CDC40P40968 UTP22YGR090W 3714 nt1.58□□□□□ -2.16
CDC40P40968 SMY1YKL079W 1971 nt1.58□□□□□ -2.16
CDC40P40968 SPC1YJR010C-A 285 nt1.58□□□□□ -2.16
CDC40P40968 IRC19YLL033W 693 nt1.58□□□□□ -2.16
CDC40P40968 TMA10YLR327C 261 nt1.58□□□□□ -2.16
CDC40P40968 SWS2YNL081C 432 nt1.58□□□□□ -2.16
CDC40P40968 HIR3YJR140C 4947 nt1.58□□□□□ -2.16
CDC40P40968 YLR149CYLR149C 2193 nt1.58□□□□□ -2.16
CDC40P40968 YSW1YBR148W 1830 nt1.57□□□□□ -2.16
CDC40P40968 ASM4YDL088C 1587 nt1.57□□□□□ -2.16
CDC40P40968 HNT1YDL125C 477 nt1.57□□□□□ -2.16
CDC40P40968 GCN4YEL009C 846 nt1.57□□□□□ -2.16
CDC40P40968 VTC1YER072W 390 nt1.57□□□□□ -2.16
CDC40P40968 tT(UGU)Q1tT(UGU)Q1 76 nt1.57□□□□□ -2.16
Retrieved 100 of 7,029 protein–RNA pairs in 31.7 ms