Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 LRRC75A-AS1-204ENST00000475947 598 ntTSL 215.24■□□□□ 0.033e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC14.76□□□□□ -0.053e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-221ENST00000580180 753 ntTSL 213.95□□□□□ -0.183e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC12.25□□□□□ -0.453e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-230ENST00000584926 604 ntTSL 511.83□□□□□ -0.523e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)11.83□□□□□ -0.523e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-216ENST00000492250 565 ntTSL 57.35□□□□□ -1.233e-18■□□□□ 10.2
ABCF1Q8NE71 LRRC75A-AS1-211ENST00000483140 936 ntTSL 27.15□□□□□ -1.263e-18■□□□□ 10.2
ABCF1Q8NE71 SNORD49B-201ENST00000365172 72 ntBASIC-0.18□□□□□ -2.443e-18■□□□□ 10.2
ABCF1Q8NE71 NCL-210ENST00000494618 910 ntTSL 27.05□□□□□ -1.284e-12■□□□□ 10.2
ABCF1Q8NE71 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.415e-6■□□□□ 10.1
ABCF1Q8NE71 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC48.3■■■■■ 5.325e-7■□□□□ 10
ABCF1Q8NE71 AES-203ENST00000585557 491 ntTSL 542.68■■■■■ 4.425e-7■□□□□ 10
ABCF1Q8NE71 AES-206ENST00000586742 1666 ntTSL 327.51■■□□□ 1.995e-7■□□□□ 10
ABCF1Q8NE71 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC23.26■■□□□ 1.315e-7■□□□□ 10
ABCF1Q8NE71 AES-204ENST00000585782 505 ntTSL 222.11■■□□□ 1.135e-7■□□□□ 10
ABCF1Q8NE71 AES-205ENST00000586003 367 ntTSL 221.31■■□□□ 15e-7■□□□□ 10
ABCF1Q8NE71 RPL23A-209ENST00000582736 595 ntTSL 1 (best)22.99■■□□□ 1.271e-17■□□□□ 10
ABCF1Q8NE71 SNORD42B-201ENST00000458893 67 ntBASIC0.22□□□□□ -2.371e-17■□□□□ 10
ABCF1Q8NE71 snoU2-30.1-201ENST00000365012 70 ntBASIC2.07□□□□□ -2.083e-14■□□□□ 9.9
ABCF1Q8NE71 HES6-209ENST00000450098 530 ntTSL 351.17■■■■■ 5.783e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-203ENST00000409160 1600 ntTSL 2 BASIC45.84■■■■■ 4.933e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-205ENST00000409356 528 ntTSL 2 BASIC38.2■■■■□ 3.713e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-208ENST00000436051 512 ntTSL 336.38■■■■□ 3.413e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-204ENST00000409182 863 ntTSL 2 BASIC35.75■■■■□ 3.313e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-207ENST00000417803 474 ntTSL 334.03■■■■□ 3.043e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC33.28■■■□□ 2.923e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-206ENST00000409574 738 ntTSL 2 BASIC33.02■■■□□ 2.883e-7■□□□□ 9.9
ABCF1Q8NE71 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.783e-7■□□□□ 9.9
ABCF1Q8NE71 ATP5B-203ENST00000547808 705 ntTSL 528.93■■■□□ 2.222e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-210ENST00000552959 1085 ntTSL 328.93■■■□□ 2.222e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-207ENST00000551020 856 ntTSL 328.16■■■□□ 2.12e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-211ENST00000553007 814 ntTSL 528.16■■■□□ 2.12e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-205ENST00000548647 682 ntTSL 523.96■■□□□ 1.432e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.42e-9■□□□□ 9.8
ABCF1Q8NE71 ATP5B-204ENST00000548474 449 ntTSL 39.22□□□□□ -0.932e-9■□□□□ 9.8
ABCF1Q8NE71 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC31.85■■■□□ 2.691e-7■□□□□ 9.7
ABCF1Q8NE71 ABL1-202ENST00000372348 3824 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -01e-7■□□□□ 9.7
ABCF1Q8NE71 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC29.86■■■□□ 2.372e-6■□□□□ 9.7
ABCF1Q8NE71 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.332e-6■□□□□ 9.7
ABCF1Q8NE71 AC092384.3-202ENST00000564646 2873 ntBASIC19.54■□□□□ 0.722e-6■□□□□ 9.7
ABCF1Q8NE71 RNF149-202ENST00000424632 2010 ntTSL 227.45■■□□□ 1.984e-12■□□□□ 9.6
ABCF1Q8NE71 SNORD89-201ENST00000390981 114 ntBASIC1.21□□□□□ -2.224e-12■□□□□ 9.6
ABCF1Q8NE71 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC27.62■■■□□ 2.012e-8■□□□□ 9.6
ABCF1Q8NE71 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.822e-8■□□□□ 9.6
ABCF1Q8NE71 ATP2A2-203ENST00000377685 5702 ntTSL 526.26■■□□□ 1.794e-22■□□□□ 9.6
ABCF1Q8NE71 FLNA-208ENST00000438732 696 ntTSL 525.92■■□□□ 1.742e-8■□□□□ 9.6
ABCF1Q8NE71 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.612e-8■□□□□ 9.6
ABCF1Q8NE71 TRIM28-206ENST00000595974 665 ntTSL 324.22■■□□□ 1.472e-8■□□□□ 9.6
ABCF1Q8NE71 FLNA-213ENST00000466325 828 ntTSL 222.36■■□□□ 1.172e-8■□□□□ 9.6
ABCF1Q8NE71 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.174e-22■□□□□ 9.6
ABCF1Q8NE71 FLNA-205ENST00000415241 704 ntTSL 522.22■■□□□ 1.152e-8■□□□□ 9.6
ABCF1Q8NE71 TRIM28-207ENST00000597136 1552 ntTSL 221.89■■□□□ 1.092e-8■□□□□ 9.6
ABCF1Q8NE71 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.912e-8■□□□□ 9.6
ABCF1Q8NE71 FLNA-216ENST00000490936 5374 ntTSL 1 (best)19.5■□□□□ 0.712e-8■□□□□ 9.6
ABCF1Q8NE71 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.684e-22■□□□□ 9.6
ABCF1Q8NE71 ATP2A2-211ENST00000552636 529 ntTSL 4 BASIC18.82■□□□□ 0.64e-22■□□□□ 9.6
ABCF1Q8NE71 THAP9-AS1-202ENST00000504520 2770 ntTSL 1 (best) BASIC15.86■□□□□ 0.132e-8■□□□□ 9.6
ABCF1Q8NE71 SEC31A-220ENST00000507051 458 ntTSL 414.38□□□□□ -0.112e-8■□□□□ 9.6
ABCF1Q8NE71 SEC31A-218ENST00000506495 541 ntTSL 414.36□□□□□ -0.112e-8■□□□□ 9.6
ABCF1Q8NE71 THAP9-AS1-208ENST00000508772 566 ntTSL 414.36□□□□□ -0.112e-8■□□□□ 9.6
ABCF1Q8NE71 TRIM28-214ENST00000600840 338 ntTSL 213.11□□□□□ -0.312e-8■□□□□ 9.6
ABCF1Q8NE71 THAP9-AS1-210ENST00000511271 516 ntTSL 212.97□□□□□ -0.332e-8■□□□□ 9.6
ABCF1Q8NE71 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC12.18□□□□□ -0.462e-8■□□□□ 9.6
ABCF1Q8NE71 SEC31A-222ENST00000507676 551 ntTSL 410.88□□□□□ -0.672e-8■□□□□ 9.6
ABCF1Q8NE71 THAP9-AS1-211ENST00000512932 971 ntTSL 210.16□□□□□ -0.782e-8■□□□□ 9.6
ABCF1Q8NE71 SEC31A-211ENST00000503210 553 ntTSL 410.07□□□□□ -0.82e-8■□□□□ 9.6
ABCF1Q8NE71 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.71□□□□□ -1.342e-8■□□□□ 9.6
ABCF1Q8NE71 RHOT2-212ENST00000564659 854 ntTSL 224.59■■□□□ 1.539e-6■□□□□ 9.6
ABCF1Q8NE71 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.489e-6■□□□□ 9.6
ABCF1Q8NE71 RHOT2-222ENST00000569675 2559 ntTSL 223.15■■□□□ 1.39e-6■□□□□ 9.6
ABCF1Q8NE71 RHOT2-218ENST00000568636 3098 ntTSL 220.4■□□□□ 0.869e-6■□□□□ 9.6
ABCF1Q8NE71 RHOT2-220ENST00000569197 530 ntTSL 518.66■□□□□ 0.589e-6■□□□□ 9.6
ABCF1Q8NE71 GAS5-209ENST00000430245 723 ntTSL 3 BASIC20.79■□□□□ 0.928e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC16.25■□□□□ 0.198e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-224ENST00000454068 688 ntTSL 5 BASIC14.36□□□□□ -0.118e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-214ENST00000436656 822 ntTSL 314.31□□□□□ -0.128e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-216ENST00000443799 897 ntTSL 514.31□□□□□ -0.128e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-203ENST00000416952 799 ntTSL 213.59□□□□□ -0.238e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-210ENST00000431268 1698 ntTSL 213.03□□□□□ -0.328e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-219ENST00000449289 542 ntTSL 3 BASIC11.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-220ENST00000449589 712 ntTSL 311.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-226ENST00000455838 632 ntTSL 211.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-227ENST00000456293 583 ntTSL 310.68□□□□□ -0.78e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-201ENST00000412059 979 ntTSL 58.39□□□□□ -1.078e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-204ENST00000421068 1060 ntTSL 27.26□□□□□ -1.258e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.65□□□□□ -1.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-229ENST00000458220 469 ntTSL 24.86□□□□□ -1.638e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.64□□□□□ -1.838e-26■□□□□ 9.5
ABCF1Q8NE71 NCL-207ENST00000461347 3967 ntTSL 217.7■□□□□ 0.423e-12■□□□□ 9.5
ABCF1Q8NE71 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.113e-12■□□□□ 9.5
ABCF1Q8NE71 FLNA-211ENST00000465144 398 ntTSL 225.78■■□□□ 1.721e-7■□□□□ 9.4
ABCF1Q8NE71 DAZAP1-207ENST00000589484 3414 ntTSL 216.22■□□□□ 0.191e-7■□□□□ 9.4
ABCF1Q8NE71 SNORD4A-201ENST00000459174 72 ntBASIC-0.27□□□□□ -2.459e-15■□□□□ 9.4
ABCF1Q8NE71 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.595e-18■□□□□ 9.3
ABCF1Q8NE71 PDE3A-202ENST00000542675 685 ntTSL 318.35■□□□□ 0.535e-18■□□□□ 9.3
ABCF1Q8NE71 RAB10-204ENST00000495146 1292 ntTSL 535.49■■■■□ 3.271e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-210ENST00000432052 598 ntTSL 431.39■■■□□ 2.621e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-225ENST00000477824 571 ntTSL 531.1■■■□□ 2.571e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-215ENST00000444094 551 ntTSL 429.47■■■□□ 2.311e-6■□□□□ 9.2
Retrieved 100 of 811 protein–RNA pairs in 31.1 ms