Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CCDC40Q4G0X9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CCDC40Q4G0X9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.83■■■□□ 2.21
CCDC40Q4G0X9 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CCDC40Q4G0X9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.82■■■□□ 2.2
CCDC40Q4G0X9 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CCDC40Q4G0X9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 AC010864.1-201ENST00000609407 1511 ntBASIC28.81■■■□□ 2.2
CCDC40Q4G0X9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CCDC40Q4G0X9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
CCDC40Q4G0X9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCDC40Q4G0X9 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.79■■■□□ 2.2
CCDC40Q4G0X9 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
CCDC40Q4G0X9 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.79■■■□□ 2.2
CCDC40Q4G0X9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC40Q4G0X9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.78■■■□□ 2.2
CCDC40Q4G0X9 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.77■■■□□ 2.2
CCDC40Q4G0X9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC40Q4G0X9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CCDC40Q4G0X9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC40Q4G0X9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC40Q4G0X9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CCDC40Q4G0X9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
CCDC40Q4G0X9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.7■■■□□ 2.18
CCDC40Q4G0X9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.7■■■□□ 2.18
CCDC40Q4G0X9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC40Q4G0X9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC40Q4G0X9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC28.69■■■□□ 2.18
CCDC40Q4G0X9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC40Q4G0X9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC40Q4G0X9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
CCDC40Q4G0X9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC40Q4G0X9 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.68■■■□□ 2.18
CCDC40Q4G0X9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC40Q4G0X9 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC28.68■■■□□ 2.18
CCDC40Q4G0X9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
CCDC40Q4G0X9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
CCDC40Q4G0X9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CCDC40Q4G0X9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CCDC40Q4G0X9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.66■■■□□ 2.18
CCDC40Q4G0X9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CCDC40Q4G0X9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
CCDC40Q4G0X9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
CCDC40Q4G0X9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC40Q4G0X9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.64■■■□□ 2.18
CCDC40Q4G0X9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
CCDC40Q4G0X9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC40Q4G0X9 AL139393.2-201ENST00000608721 2025 ntBASIC28.62■■■□□ 2.17
CCDC40Q4G0X9 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC28.62■■■□□ 2.17
CCDC40Q4G0X9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
CCDC40Q4G0X9 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC40Q4G0X9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC40Q4G0X9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC40Q4G0X9 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC40Q4G0X9 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
CCDC40Q4G0X9 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC40Q4G0X9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC40Q4G0X9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC40Q4G0X9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.58■■■□□ 2.17
CCDC40Q4G0X9 MIR762-201ENST00000390236 83 ntBASIC28.58■■■□□ 2.17
CCDC40Q4G0X9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.58■■■□□ 2.17
CCDC40Q4G0X9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC40Q4G0X9 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC40Q4G0X9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.57■■■□□ 2.16
CCDC40Q4G0X9 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CCDC40Q4G0X9 SUZ12P1-203ENST00000578195 985 ntBASIC28.56■■■□□ 2.16
CCDC40Q4G0X9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
CCDC40Q4G0X9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CCDC40Q4G0X9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.54■■■□□ 2.16
CCDC40Q4G0X9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
CCDC40Q4G0X9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CCDC40Q4G0X9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
CCDC40Q4G0X9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.53■■■□□ 2.16
CCDC40Q4G0X9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.53■■■□□ 2.16
CCDC40Q4G0X9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC40Q4G0X9 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC40Q4G0X9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
CCDC40Q4G0X9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.52■■■□□ 2.16
CCDC40Q4G0X9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.51■■■□□ 2.15
CCDC40Q4G0X9 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.51■■■□□ 2.15
CCDC40Q4G0X9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.51■■■□□ 2.15
CCDC40Q4G0X9 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CCDC40Q4G0X9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
CCDC40Q4G0X9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.5■■■□□ 2.15
CCDC40Q4G0X9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
CCDC40Q4G0X9 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCDC40Q4G0X9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.48■■■□□ 2.15
CCDC40Q4G0X9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.48■■■□□ 2.15
CCDC40Q4G0X9 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CCDC40Q4G0X9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CCDC40Q4G0X9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.45■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms