Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
RHBDL3P58872 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.65■■■□□ 2.66
RHBDL3P58872 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RHBDL3P58872 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RHBDL3P58872 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.64■■■□□ 2.66
RHBDL3P58872 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
RHBDL3P58872 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RHBDL3P58872 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.61■■■□□ 2.65
RHBDL3P58872 LINC01971-201ENST00000617888 1048 ntBASIC31.6■■■□□ 2.65
RHBDL3P58872 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.59■■■□□ 2.65
RHBDL3P58872 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.59■■■□□ 2.65
RHBDL3P58872 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RHBDL3P58872 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
RHBDL3P58872 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RHBDL3P58872 DUX4L11-201ENST00000611504 1267 ntBASIC31.57■■■□□ 2.64
RHBDL3P58872 DUX4L12-201ENST00000614593 1267 ntBASIC31.57■■■□□ 2.64
RHBDL3P58872 DUX4L14-201ENST00000621227 1267 ntBASIC31.57■■■□□ 2.64
RHBDL3P58872 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RHBDL3P58872 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.56■■■□□ 2.64
RHBDL3P58872 MIR3648-2-201ENST00000581792 180 ntBASIC31.56■■■□□ 2.64
RHBDL3P58872 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.56■■■□□ 2.64
RHBDL3P58872 MIR3648-1-201ENST00000615959 180 ntBASIC31.56■■■□□ 2.64
RHBDL3P58872 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
RHBDL3P58872 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.54■■■□□ 2.64
RHBDL3P58872 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.53■■■□□ 2.64
RHBDL3P58872 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
RHBDL3P58872 MIR639-201ENST00000384974 98 ntBASIC31.52■■■□□ 2.64
RHBDL3P58872 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.52■■■□□ 2.64
RHBDL3P58872 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RHBDL3P58872 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.52■■■□□ 2.64
RHBDL3P58872 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.51■■■□□ 2.63
RHBDL3P58872 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.51■■■□□ 2.63
RHBDL3P58872 AC016575.1-201ENST00000607026 382 ntBASIC31.51■■■□□ 2.63
RHBDL3P58872 CR559946.2-201ENST00000623684 991 ntBASIC31.51■■■□□ 2.63
RHBDL3P58872 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
RHBDL3P58872 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
RHBDL3P58872 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
RHBDL3P58872 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.5■■■□□ 2.63
RHBDL3P58872 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RHBDL3P58872 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RHBDL3P58872 AC010864.1-201ENST00000609407 1511 ntBASIC31.48■■■□□ 2.63
RHBDL3P58872 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RHBDL3P58872 MIR4449-201ENST00000578365 66 ntBASIC31.47■■■□□ 2.63
RHBDL3P58872 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RHBDL3P58872 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
RHBDL3P58872 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.46■■■□□ 2.63
RHBDL3P58872 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
RHBDL3P58872 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
RHBDL3P58872 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RHBDL3P58872 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.43■■■□□ 2.62
RHBDL3P58872 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.43■■■□□ 2.62
RHBDL3P58872 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RHBDL3P58872 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
RHBDL3P58872 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RHBDL3P58872 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
RHBDL3P58872 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.41■■■□□ 2.62
RHBDL3P58872 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.41■■■□□ 2.62
RHBDL3P58872 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.4■■■□□ 2.62
RHBDL3P58872 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RHBDL3P58872 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RHBDL3P58872 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
RHBDL3P58872 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RHBDL3P58872 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RHBDL3P58872 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RHBDL3P58872 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RHBDL3P58872 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RHBDL3P58872 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
RHBDL3P58872 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RHBDL3P58872 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.36■■■□□ 2.61
RHBDL3P58872 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L13-201ENST00000554103 1267 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L15-201ENST00000611059 1267 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L23-201ENST00000615195 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L24-201ENST00000617576 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L22-201ENST00000618238 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L20-201ENST00000619712 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L21-201ENST00000622058 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L10-201ENST00000622460 1267 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 DUX4L25-201ENST00000624915 1269 ntBASIC31.35■■■□□ 2.61
RHBDL3P58872 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RHBDL3P58872 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
RHBDL3P58872 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
RHBDL3P58872 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
RHBDL3P58872 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.33■■■□□ 2.61
RHBDL3P58872 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
RHBDL3P58872 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RHBDL3P58872 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.6
RHBDL3P58872 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RHBDL3P58872 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.32■■■□□ 2.6
RHBDL3P58872 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.31■■■□□ 2.6
RHBDL3P58872 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
RHBDL3P58872 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RHBDL3P58872 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RHBDL3P58872 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.3■■■□□ 2.6
RHBDL3P58872 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.3■■■□□ 2.6
RHBDL3P58872 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RHBDL3P58872 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.29■■■□□ 2.6
RHBDL3P58872 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RHBDL3P58872 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.29■■■□□ 2.6
RHBDL3P58872 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms