Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.028e-6■■■■□ 25.1
SFPQP23246 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC15.1■□□□□ 0.018e-6■■■■□ 25.1
SFPQP23246 NUP62-215ENST00000599186 466 ntTSL 515.1■□□□□ 0.018e-6■■■■□ 25.1
SFPQP23246 NUP62-214ENST00000598301 565 ntTSL 415.1■□□□□ 0.018e-6■■■■□ 25.1
SFPQP23246 PLEC-212ENST00000527816 583 ntTSL 315□□□□□ -0.018e-6■■■■□ 25.1
SFPQP23246 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC14.76□□□□□ -0.058e-6■■■■□ 25.1
SFPQP23246 PPARG-206ENST00000397012 2006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.058e-6■■■■□ 25.1
SFPQP23246 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.72□□□□□ -0.058e-6■■■■□ 25.1
SFPQP23246 AGAP3-214ENST00000476375 1019 ntTSL 514.54□□□□□ -0.088e-6■■■■□ 25.1
SFPQP23246 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.088e-6■■■■□ 25.1
SFPQP23246 PCGF3-207ENST00000440452 3609 ntTSL 214.39□□□□□ -0.118e-6■■■■□ 25.1
SFPQP23246 PPARG-210ENST00000397029 686 ntTSL 314.38□□□□□ -0.118e-6■■■■□ 25.1
SFPQP23246 NUP62-201ENST00000352066 2870 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.128e-6■■■■□ 25.1
SFPQP23246 PPARG-212ENST00000455517 428 ntTSL 1 (best)14.29□□□□□ -0.128e-6■■■■□ 25.1
SFPQP23246 TNS1-214ENST00000479185 2513 ntTSL 514.23□□□□□ -0.138e-6■■■■□ 25.1
SFPQP23246 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.158e-6■■■■□ 25.1
SFPQP23246 IL4I1-207ENST00000597295 651 ntTSL 314.07□□□□□ -0.168e-6■■■■□ 25.1
SFPQP23246 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.178e-6■■■■□ 25.1
SFPQP23246 NUP62-223ENST00000601665 531 ntTSL 513.88□□□□□ -0.198e-6■■■■□ 25.1
SFPQP23246 NUP62-216ENST00000599560 562 ntTSL 213.65□□□□□ -0.228e-6■■■■□ 25.1
SFPQP23246 NUP62-220ENST00000600583 782 ntTSL 413.63□□□□□ -0.238e-6■■■■□ 25.1
SFPQP23246 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.258e-6■■■■□ 25.1
SFPQP23246 IL4I1-205ENST00000596011 714 ntTSL 213.48□□□□□ -0.258e-6■■■■□ 25.1
SFPQP23246 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.268e-6■■■■□ 25.1
SFPQP23246 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.278e-6■■■■□ 25.1
SFPQP23246 NUP62-209ENST00000596437 894 ntTSL 413.35□□□□□ -0.278e-6■■■■□ 25.1
SFPQP23246 MYO18A-219ENST00000585573 319 ntTSL 313.17□□□□□ -0.38e-6■■■■□ 25.1
SFPQP23246 PDE9A-211ENST00000398232 1885 ntTSL 1 (best) BASIC13.13□□□□□ -0.318e-6■■■■□ 25.1
SFPQP23246 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.348e-6■■■■□ 25.1
SFPQP23246 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.348e-6■■■■□ 25.1
SFPQP23246 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.358e-6■■■■□ 25.1
SFPQP23246 MYO18A-209ENST00000531253 7504 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.358e-6■■■■□ 25.1
SFPQP23246 PDE9A-210ENST00000398229 1684 ntTSL 1 (best) BASIC12.8□□□□□ -0.368e-6■■■■□ 25.1
SFPQP23246 PDE9A-207ENST00000398224 1671 ntTSL 1 (best) BASIC12.8□□□□□ -0.368e-6■■■■□ 25.1
SFPQP23246 MED15-226ENST00000478831 707 ntTSL 412.79□□□□□ -0.368e-6■■■■□ 25.1
SFPQP23246 PLEC-205ENST00000356346 14683 ntTSL 1 (best) BASIC12.72□□□□□ -0.378e-6■■■■□ 25.1
SFPQP23246 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC12.6□□□□□ -0.398e-6■■■■□ 25.1
SFPQP23246 MED15-230ENST00000492381 3619 ntTSL 212.49□□□□□ -0.418e-6■■■■□ 25.1
SFPQP23246 NUP62-222ENST00000600935 587 ntTSL 412.45□□□□□ -0.428e-6■■■■□ 25.1
SFPQP23246 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC12.26□□□□□ -0.458e-6■■■■□ 25.1
SFPQP23246 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.518e-6■■■■□ 25.1
SFPQP23246 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.528e-6■■■■□ 25.1
SFPQP23246 NUP62-218ENST00000599788 564 ntTSL 411.71□□□□□ -0.538e-6■■■■□ 25.1
SFPQP23246 NUP62-202ENST00000422090 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.548e-6■■■■□ 25.1
SFPQP23246 AC011452.1-201ENST00000451973 575 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.578e-6■■■■□ 25.1
SFPQP23246 AL109615.3-201ENST00000422059 2232 ntTSL 2 BASIC11.42□□□□□ -0.588e-6■■■■□ 25.1
SFPQP23246 PDE9A-204ENST00000335512 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.638e-6■■■■□ 25.1
SFPQP23246 PPARG-214ENST00000497594 1600 ntTSL 1 (best)10.99□□□□□ -0.658e-6■■■■□ 25.1
SFPQP23246 TNFRSF19-201ENST00000248484 3276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.668e-6■■■■□ 25.1
SFPQP23246 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.678e-6■■■■□ 25.1
SFPQP23246 NUP62-203ENST00000593652 905 ntTSL 210.59□□□□□ -0.718e-6■■■■□ 25.1
SFPQP23246 NUP62-217ENST00000599567 579 ntTSL 410.38□□□□□ -0.758e-6■■■■□ 25.1
SFPQP23246 PDE9A-222ENST00000472401 431 ntTSL 310.15□□□□□ -0.788e-6■■■■□ 25.1
SFPQP23246 PDE9A-223ENST00000486902 794 ntTSL 210.15□□□□□ -0.788e-6■■■■□ 25.1
SFPQP23246 HDGF-206ENST00000471377 592 ntTSL 310.14□□□□□ -0.798e-6■■■■□ 25.1
SFPQP23246 PPARG-207ENST00000397015 1722 ntAPPRIS ALT1 TSL 1 (best) BASIC9.94□□□□□ -0.828e-6■■■■□ 25.1
SFPQP23246 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.848e-6■■■■□ 25.1
SFPQP23246 PPARG-209ENST00000397026 2029 ntTSL 5 BASIC9.67□□□□□ -0.868e-6■■■■□ 25.1
SFPQP23246 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC9.08□□□□□ -0.968e-6■■■■□ 25.1
SFPQP23246 NUP62-213ENST00000597814 510 ntTSL 48.68□□□□□ -1.028e-6■■■■□ 25.1
SFPQP23246 MIR193BHG-204ENST00000634265 892 ntTSL 58.28□□□□□ -1.088e-6■■■■□ 25.1
SFPQP23246 NUP62-210ENST00000596680 473 ntTSL 27.46□□□□□ -1.228e-6■■■■□ 25.1
SFPQP23246 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC7.2□□□□□ -1.268e-6■■■■□ 25.1
SFPQP23246 PPARG-211ENST00000438682 560 ntTSL 36.8□□□□□ -1.328e-6■■■■□ 25.1
SFPQP23246 MYO18A-222ENST00000590565 261 ntTSL 33.18□□□□□ -1.98e-6■■■■□ 25.1
SFPQP23246 GLG1-209ENST00000565260 461 ntTSL 530.26■■■□□ 2.438e-7■■■■□ 25
SFPQP23246 PPP1R37-206ENST00000544069 712 ntTSL 526.22■■□□□ 1.798e-7■■■■□ 25
SFPQP23246 KLC1-211ENST00000538504 822 ntTSL 225.61■■□□□ 1.698e-7■■■■□ 25
SFPQP23246 JADE1-204ENST00000503785 584 ntTSL 425.32■■□□□ 1.648e-7■■■■□ 25
SFPQP23246 KLC1-226ENST00000557686 535 ntTSL 324.15■■□□□ 1.468e-7■■■■□ 25
SFPQP23246 JADE1-208ENST00000510308 564 ntTSL 222.48■■□□□ 1.198e-7■■■■□ 25
SFPQP23246 GLG1-213ENST00000567951 2918 ntTSL 1 (best)22.11■■□□□ 1.138e-7■■■■□ 25
SFPQP23246 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.97■■□□□ 1.118e-7■■■■□ 25
SFPQP23246 AL049840.3-201ENST00000602669 611 ntBASIC19.41■□□□□ 0.78e-7■■■■□ 25
SFPQP23246 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.538e-7■■■■□ 25
SFPQP23246 JADE1-206ENST00000507833 552 ntTSL 418.21■□□□□ 0.518e-7■■■■□ 25
SFPQP23246 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.498e-7■■■■□ 25
SFPQP23246 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.498e-7■■■■□ 25
SFPQP23246 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.368e-7■■■■□ 25
SFPQP23246 GLG1-206ENST00000562090 4037 ntTSL 216.68■□□□□ 0.268e-7■■■■□ 25
SFPQP23246 MARK4-203ENST00000587566 553 ntTSL 516■□□□□ 0.158e-7■■■■□ 25
SFPQP23246 JADE1-212ENST00000514740 532 ntTSL 415.5■□□□□ 0.078e-7■■■■□ 25
SFPQP23246 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.18e-7■■■■□ 25
SFPQP23246 JADE1-201ENST00000226319 5772 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.28e-7■■■■□ 25
SFPQP23246 JADE1-213ENST00000610919 5644 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.298e-7■■■■□ 25
SFPQP23246 JADE1-210ENST00000511925 529 ntTSL 412.69□□□□□ -0.388e-7■■■■□ 25
SFPQP23246 JADE1-205ENST00000504089 567 ntTSL 412.06□□□□□ -0.488e-7■■■■□ 25
SFPQP23246 JADE1-214ENST00000611140 5648 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.548e-7■■■■□ 25
SFPQP23246 JADE1-211ENST00000512960 3000 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.548e-7■■■■□ 25
SFPQP23246 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.78e-7■■■■□ 25
SFPQP23246 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.878e-7■■■■□ 25
SFPQP23246 LPP-216ENST00000484468 578 ntTSL 38.47□□□□□ -1.058e-7■■■■□ 25
SFPQP23246 LPP-219ENST00000494233 412 ntTSL 56.66□□□□□ -1.348e-7■■■■□ 25
SFPQP23246 PPP1R37-207ENST00000544897 527 ntTSL 23.91□□□□□ -1.788e-7■■■■□ 25
SFPQP23246 DLGAP4-AS1-201ENST00000425233 443 ntTSL 517.46■□□□□ 0.392e-6■■■■□ 24.8
SFPQP23246 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC14.27□□□□□ -0.132e-6■■■■□ 24.8
SFPQP23246 LPCAT1-206ENST00000514484 756 ntTSL 321.08■□□□□ 0.979e-7■■■■□ 24.8
SFPQP23246 LPCAT1-202ENST00000475622 5610 ntTSL 520.77■□□□□ 0.929e-7■■■■□ 24.8
SFPQP23246 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.149e-7■■■■□ 24.8
SFPQP23246 LPP-203ENST00000416784 612 ntTSL 310.14□□□□□ -0.793e-6■■■■□ 24.7
Retrieved 100 of 4,991 protein–RNA pairs in 214.8 ms