Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.74■□□□□ 0.43
ABCA4P78363 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.73■□□□□ 0.43
ABCA4P78363 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.73■□□□□ 0.43
ABCA4P78363 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
ABCA4P78363 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.73■□□□□ 0.43
ABCA4P78363 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.73■□□□□ 0.43
ABCA4P78363 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ABCA4P78363 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ABCA4P78363 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA4P78363 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCA4P78363 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCA4P78363 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
ABCA4P78363 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.72■□□□□ 0.43
ABCA4P78363 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 AC105020.6-201ENST00000621523 1217 ntBASIC17.72■□□□□ 0.43
ABCA4P78363 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCA4P78363 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.72■□□□□ 0.43
ABCA4P78363 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA4P78363 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
ABCA4P78363 AC133681.1-201ENST00000465482 601 ntBASIC17.72■□□□□ 0.43
ABCA4P78363 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.72■□□□□ 0.43
ABCA4P78363 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
ABCA4P78363 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ABCA4P78363 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ABCA4P78363 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.71■□□□□ 0.43
ABCA4P78363 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
ABCA4P78363 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
ABCA4P78363 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.71■□□□□ 0.43
ABCA4P78363 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCA4P78363 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.71■□□□□ 0.43
ABCA4P78363 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCA4P78363 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
ABCA4P78363 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ABCA4P78363 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ABCA4P78363 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
ABCA4P78363 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 KRT18P21-201ENST00000515767 1272 ntBASIC17.7■□□□□ 0.42
ABCA4P78363 AC120498.8-201ENST00000614275 531 ntBASIC17.7■□□□□ 0.42
ABCA4P78363 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.7■□□□□ 0.42
ABCA4P78363 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 AC087633.2-202ENST00000565166 1439 ntBASIC17.7■□□□□ 0.42
ABCA4P78363 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
ABCA4P78363 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.7■□□□□ 0.42
ABCA4P78363 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.7■□□□□ 0.42
ABCA4P78363 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 AL049637.2-201ENST00000641778 930 ntBASIC17.7■□□□□ 0.42
ABCA4P78363 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ABCA4P78363 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.7■□□□□ 0.42
ABCA4P78363 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ABCA4P78363 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms