Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 AL391005.1-201ENST00000623953 2435 ntBASIC14.56□□□□□ -0.08
VPS25Q9BRG1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.56□□□□□ -0.08
VPS25Q9BRG1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
VPS25Q9BRG1 FEM1AP1-201ENST00000431297 1995 ntBASIC14.54□□□□□ -0.08
VPS25Q9BRG1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 AL049812.1-201ENST00000432563 2267 ntBASIC14.54□□□□□ -0.08
VPS25Q9BRG1 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS25Q9BRG1 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 AC092068.2-201ENST00000590491 1708 ntBASIC14.53□□□□□ -0.08
VPS25Q9BRG1 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS25Q9BRG1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS25Q9BRG1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms