RNA–Protein interactions for RNA: ENST00000262395.9

TRAF4-201, Transcript of TNF receptor associated factor 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF4, Length 2,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-201ENST00000262395 NISCHQ9Y2I1 1504 aa35.67■■■■□ 3.3
TRAF4-201ENST00000262395 SHROOM4Q9ULL8 1493 aa31.4■■■□□ 2.62
TRAF4-201ENST00000262395 SUPT5HO00267 1087 aaKnown RBP31■■■□□ 2.55
TRAF4-201ENST00000262395 ZCCHC6Q5VYS8 1495 aaKnown RBP30.21■■■□□ 2.43
TRAF4-201ENST00000262395 DCAF8L2P0C7V8 631 aa30.19■■■□□ 2.42
TRAF4-201ENST00000262395 MYO15BQ96JP2 1530 aa30.13■■■□□ 2.41
TRAF4-201ENST00000262395 CHIC1Q5VXU3 224 aa30.09■■■□□ 2.41
TRAF4-201ENST00000262395 HRCP23327 699 aa29.94■■■□□ 2.38
TRAF4-201ENST00000262395 PCGF6Q9BYE7 350 aa29.86■■■□□ 2.37
TRAF4-201ENST00000262395 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
TRAF4-201ENST00000262395 PPARGC1BQ86YN6 1023 aaKnown RBP29.6■■■□□ 2.33
TRAF4-201ENST00000262395 LOC105371045A0A1W2PR82 267 aa29.49■■■□□ 2.31
TRAF4-201ENST00000262395 DCAF1Q9Y4B6 1507 aa29.09■■■□□ 2.25
TRAF4-201ENST00000262395 TRIM26Q12899 539 aaPredicted RBP28.9■■■□□ 2.22
TRAF4-201ENST00000262395 FAM9AQ8IZU1 332 aaPredicted RBP28.73■■■□□ 2.19
TRAF4-201ENST00000262395 EHMT2Q96KQ7 1210 aa28.73■■■□□ 2.19
TRAF4-201ENST00000262395 TRIM41Q8WV44 630 aa28.63■■■□□ 2.17
TRAF4-201ENST00000262395 ABCC9O60706 1549 aa28.58■■■□□ 2.17
TRAF4-201ENST00000262395 RSF1Q96T23 1441 aaPredicted RBP28.54■■■□□ 2.16
TRAF4-201ENST00000262395 SCRIBQ14160 1630 aa28.52■■■□□ 2.16
TRAF4-201ENST00000262395 RB1CC1Q8TDY2 1594 aa28.36■■■□□ 2.13
TRAF4-201ENST00000262395 ZEB1P37275 1124 aaPredicted RBP28.31■■■□□ 2.12
TRAF4-201ENST00000262395 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
TRAF4-201ENST00000262395 PELP1Q8IZL8 1130 aaKnown RBP28.05■■■□□ 2.08
TRAF4-201ENST00000262395 SCAF1Q9H7N4 1312 aaKnown RBP28.02■■■□□ 2.08
TRAF4-201ENST00000262395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.95■■■□□ 2.06
TRAF4-201ENST00000262395 MROH2BQ7Z745 1585 aa27.91■■■□□ 2.06
TRAF4-201ENST00000262395 TTBK1Q5TCY1 1321 aaPredicted RBP27.87■■■□□ 2.05
TRAF4-201ENST00000262395 CCER1Q8TC90 406 aaPredicted RBP27.81■■■□□ 2.04
TRAF4-201ENST00000262395 WIZO95785 1651 aa27.8■■■□□ 2.04
TRAF4-201ENST00000262395 NACADO15069 1562 aa27.58■■■□□ 2.01
TRAF4-201ENST00000262395 NEUROD1Q13562 356 aa27.54■■■□□ 2
TRAF4-201ENST00000262395 ACIN1Q9UKV3 1341 aaKnown RBP27.48■■□□□ 1.99
TRAF4-201ENST00000262395 ABCC8Q09428 1581 aa27.46■■□□□ 1.99
TRAF4-201ENST00000262395 DIEXFQ68CQ4 756 aaKnown RBP27.46■■□□□ 1.99
TRAF4-201ENST00000262395 BAZ1AQ9NRL2 1556 aaPredicted RBP27.44■■□□□ 1.98
TRAF4-201ENST00000262395 CCDC88BA6NC98 1476 aa27.41■■□□□ 1.98
TRAF4-201ENST00000262395 EIF4G1Q04637 1599 aaKnown RBP27.37■■□□□ 1.97
TRAF4-201ENST00000262395 GTF3C3Q9Y5Q9 886 aa27.32■■□□□ 1.96
TRAF4-201ENST00000262395 SOGA1O94964 1423 aa27.32■■□□□ 1.96
TRAF4-201ENST00000262395 CEP162Q5TB80 1403 aa27.31■■□□□ 1.96
TRAF4-201ENST00000262395 UBTFP17480 764 aaKnown RBP27.3■■□□□ 1.96
TRAF4-201ENST00000262395 CENPBP07199 599 aaPredicted RBP27.2■■□□□ 1.95
TRAF4-201ENST00000262395 RUSC2Q8N2Y8 1516 aa27.2■■□□□ 1.94
TRAF4-201ENST00000262395 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.94
TRAF4-201ENST00000262395 TOP2AP11388 1531 aaKnown RBP27.16■■□□□ 1.94
TRAF4-201ENST00000262395 CSRNP3Q8WYN3 585 aa27.16■■□□□ 1.94
TRAF4-201ENST00000262395 YTHDC1Q96MU7 727 aaKnown RBP27.12■■□□□ 1.93
TRAF4-201ENST00000262395 TNIKQ9UKE5 1360 aa27.11■■□□□ 1.93
TRAF4-201ENST00000262395 SMARCA2P51531 1590 aa27.1■■□□□ 1.93
TRAF4-201ENST00000262395 HNRNPUL2Q1KMD3 747 aaKnown RBP27.07■■□□□ 1.92
TRAF4-201ENST00000262395 SMARCA4P51532 1647 aa27.06■■□□□ 1.92
TRAF4-201ENST00000262395 ZNF316A6NFI3 1004 aaPredicted RBP27.05■■□□□ 1.92
TRAF4-201ENST00000262395 RANGAP1P46060 587 aaPredicted RBP26.97■■□□□ 1.91
TRAF4-201ENST00000262395 PABPN1Q86U42 306 aaKnown RBP eCLIP26.95■■□□□ 1.95e-8■■■□□ 15.8
TRAF4-201ENST00000262395 MYT1Q01538 1121 aa26.9■■□□□ 1.9
TRAF4-201ENST00000262395 GOLGA3Q08378 1498 aa26.88■■□□□ 1.89
TRAF4-201ENST00000262395 MIER1Q8N108 512 aa26.87■■□□□ 1.89
TRAF4-201ENST00000262395 EEA1Q15075 1411 aa26.86■■□□□ 1.89
TRAF4-201ENST00000262395 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
TRAF4-201ENST00000262395 CLIP1P30622 1438 aa26.71■■□□□ 1.87
TRAF4-201ENST00000262395 APLP2Q06481 763 aa26.69■■□□□ 1.86
TRAF4-201ENST00000262395 CEP164Q9UPV0 1460 aa26.65■■□□□ 1.86
TRAF4-201ENST00000262395 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
TRAF4-201ENST00000262395 RAPGEF2Q9Y4G8 1499 aa26.56■■□□□ 1.84
TRAF4-201ENST00000262395 VPS8Q8N3P4 1428 aa26.55■■□□□ 1.84
TRAF4-201ENST00000262395 KIF21BO75037 1637 aa26.5■■□□□ 1.83
TRAF4-201ENST00000262395 BICRAQ9NZM4 1560 aa26.45■■□□□ 1.82
TRAF4-201ENST00000262395 KANK4Q5T7N3 995 aaPredicted RBP26.35■■□□□ 1.81
TRAF4-201ENST00000262395 BAZ1BQ9UIG0 1483 aaKnown RBP26.33■■□□□ 1.8
TRAF4-201ENST00000262395 ATAD2BQ9ULI0 1458 aa26.32■■□□□ 1.8
TRAF4-201ENST00000262395 PEG3Q9GZU2 1588 aa26.3■■□□□ 1.8
TRAF4-201ENST00000262395 DHX57Q6P158 1386 aaKnown RBP26.28■■□□□ 1.8
TRAF4-201ENST00000262395 ITGAEP38570 1179 aa26.28■■□□□ 1.8
TRAF4-201ENST00000262395 ARAP1Q96P48 1450 aa26.16■■□□□ 1.78
TRAF4-201ENST00000262395 TOP2BQ02880 1626 aa26.13■■□□□ 1.77
TRAF4-201ENST00000262395 SUPT16HQ9Y5B9 1047 aaKnown RBP26.11■■□□□ 1.77
TRAF4-201ENST00000262395 CLSPNQ9HAW4 1339 aa26.09■■□□□ 1.77
TRAF4-201ENST00000262395 PRXQ9BXM0 1461 aa26.05■■□□□ 1.76
TRAF4-201ENST00000262395 KCNH8Q96L42 1107 aa26.04■■□□□ 1.76
TRAF4-201ENST00000262395 ERICH3Q5RHP9 1530 aa25.97■■□□□ 1.75
TRAF4-201ENST00000262395 CCNB3Q8WWL7 1395 aa25.95■■□□□ 1.74
TRAF4-201ENST00000262395 BIVM-ERCC5R4GMW8 1640 aa25.95■■□□□ 1.74
TRAF4-201ENST00000262395 RRBP1Q9P2E9 1410 aaKnown RBP25.94■■□□□ 1.74
TRAF4-201ENST00000262395 CUX1P39880 1505 aa25.91■■□□□ 1.74
TRAF4-201ENST00000262395 KIF27Q86VH2 1401 aa25.89■■□□□ 1.73
TRAF4-201ENST00000262395 ARHGAP35Q9NRY4 1499 aa25.87■■□□□ 1.73
TRAF4-201ENST00000262395 BCANQ96GW7 911 aa25.87■■□□□ 1.73
TRAF4-201ENST00000262395 RAB3GAP2Q9H2M9 1393 aa25.85■■□□□ 1.73
TRAF4-201ENST00000262395 SIN3AQ96ST3 1273 aa25.82■■□□□ 1.72
TRAF4-201ENST00000262395 TSHZ2Q9NRE2 1034 aa25.81■■□□□ 1.72
TRAF4-201ENST00000262395 DDX10Q13206 875 aaKnown RBP25.81■■□□□ 1.72
TRAF4-201ENST00000262395 ATP1B4Q9UN42 357 aaPredicted RBP25.8■■□□□ 1.72
TRAF4-201ENST00000262395 HIRIP3Q9BW71 556 aaPredicted RBP25.79■■□□□ 1.72
TRAF4-201ENST00000262395 FAM50AQ14320 339 aaKnown RBP25.79■■□□□ 1.72
TRAF4-201ENST00000262395 P3H3Q8IVL6 736 aa25.77■■□□□ 1.72
TRAF4-201ENST00000262395 CUX2O14529 1486 aa25.75■■□□□ 1.71
TRAF4-201ENST00000262395 MAPKBP1O60336 1514 aa25.72■■□□□ 1.71
TRAF4-201ENST00000262395 FKBP8Q14318 412 aa25.66■■□□□ 1.7
TRAF4-201ENST00000262395 SETD5Q9C0A6 1442 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms