Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LINC00526-201ENST00000581067 1875 ntBASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 AC091799.1-201ENST00000422823 811 ntBASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 AL034346.1-201ENST00000568244 1277 ntBASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 RMI2-205ENST00000576027 818 ntTSL 2 BASIC32.08■■■□□ 2.73
COL17A1Q9UMD9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 AL139125.2-201ENST00000623134 1869 ntBASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 AC061975.6-201ENST00000579045 1553 ntBASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 AL135905.2-201ENST00000584934 1404 ntBASIC32.07■■■□□ 2.72
COL17A1Q9UMD9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
COL17A1Q9UMD9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL17A1Q9UMD9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC32.04■■■□□ 2.72
COL17A1Q9UMD9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL17A1Q9UMD9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC32.04■■■□□ 2.72
COL17A1Q9UMD9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 OR7E47P-201ENST00000546390 1422 ntBASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL17A1Q9UMD9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 AC145285.6-201ENST00000604632 637 ntBASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 MIR6786-201ENST00000616843 113 ntBASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
COL17A1Q9UMD9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
COL17A1Q9UMD9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC32.01■■■□□ 2.72
COL17A1Q9UMD9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC32.01■■■□□ 2.72
COL17A1Q9UMD9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 AC239809.2-201ENST00000415381 517 ntBASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 RARRES2P10-201ENST00000564312 460 ntBASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
COL17A1Q9UMD9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC32.01■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms