Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
FOXN3O00409 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 AC138907.5-202ENST00000569484 235 ntBASIC22.38■■□□□ 1.17
FOXN3O00409 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.38■■□□□ 1.17
FOXN3O00409 AP004607.4-201ENST00000530158 1459 ntBASIC22.38■■□□□ 1.17
FOXN3O00409 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.38■■□□□ 1.17
FOXN3O00409 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
FOXN3O00409 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.37■■□□□ 1.17
FOXN3O00409 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.37■■□□□ 1.17
FOXN3O00409 PKD1P6-201ENST00000343738 4769 ntBASIC22.37■■□□□ 1.17
FOXN3O00409 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.37■■□□□ 1.17
FOXN3O00409 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
FOXN3O00409 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.37■■□□□ 1.17
FOXN3O00409 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.37■■□□□ 1.17
FOXN3O00409 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.37■■□□□ 1.17
FOXN3O00409 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.37■■□□□ 1.17
FOXN3O00409 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
FOXN3O00409 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.36■■□□□ 1.17
FOXN3O00409 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.36■■□□□ 1.17
FOXN3O00409 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
FOXN3O00409 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.36■■□□□ 1.17
FOXN3O00409 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.36■■□□□ 1.17
FOXN3O00409 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
FOXN3O00409 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
FOXN3O00409 AL157384.1-201ENST00000445995 2473 ntBASIC22.36■■□□□ 1.17
FOXN3O00409 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.36■■□□□ 1.17
FOXN3O00409 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.36■■□□□ 1.17
FOXN3O00409 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
FOXN3O00409 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
FOXN3O00409 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.35■■□□□ 1.17
FOXN3O00409 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.35■■□□□ 1.17
FOXN3O00409 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.35■■□□□ 1.17
FOXN3O00409 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.35■■□□□ 1.17
FOXN3O00409 KRT18P14-201ENST00000534205 1250 ntBASIC22.35■■□□□ 1.17
FOXN3O00409 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 AC104187.1-201ENST00000607510 612 ntBASIC22.35■■□□□ 1.17
FOXN3O00409 AC008175.2-201ENST00000612840 297 ntBASIC22.35■■□□□ 1.17
FOXN3O00409 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
FOXN3O00409 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
FOXN3O00409 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.35■■□□□ 1.17
FOXN3O00409 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.34■■□□□ 1.17
FOXN3O00409 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 POU5F1P4-201ENST00000413175 1085 ntBASIC22.34■■□□□ 1.17
FOXN3O00409 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
FOXN3O00409 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.34■■□□□ 1.17
FOXN3O00409 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.34■■□□□ 1.17
FOXN3O00409 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
FOXN3O00409 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.34■■□□□ 1.17
FOXN3O00409 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 AC121338.2-201ENST00000622535 1744 ntBASIC22.34■■□□□ 1.17
FOXN3O00409 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
FOXN3O00409 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
FOXN3O00409 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms