Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 AC004687.1-201ENST00000579003 1625 ntBASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 FEM1AP4-201ENST00000443167 1987 ntBASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHCHD3Q9NX63 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHCHD3Q9NX63 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 BX323043.1-201ENST00000641006 1765 ntBASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHCHD3Q9NX63 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHCHD3Q9NX63 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHCHD3Q9NX63 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CHCHD3Q9NX63 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms