Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YBL005W-AYBL005W-A 1323 nt3.59□□□□□ -1.83
RPN11P43588 PHO5YBR093C 1404 nt3.59□□□□□ -1.84
RPN11P43588 PEP7YDR323C 1548 nt3.59□□□□□ -1.84
RPN11P43588 GCD1YOR260W 1737 nt3.58□□□□□ -1.84
RPN11P43588 FUN12YAL035W 3009 nt3.58□□□□□ -1.84
RPN11P43588 NUP85YJR042W 2235 nt3.58□□□□□ -1.84
RPN11P43588 ERP3YDL018C 678 nt3.58□□□□□ -1.84
RPN11P43588 CAJ1YER048C 1176 nt3.58□□□□□ -1.84
RPN11P43588 LIN1YHR156C 1023 nt3.58□□□□□ -1.84
RPN11P43588 YLR202CYLR202C 327 nt3.58□□□□□ -1.84
RPN11P43588 ATG38YLR211C 681 nt3.58□□□□□ -1.84
RPN11P43588 VMA6YLR447C 1038 nt3.58□□□□□ -1.84
RPN11P43588 YML037CYML037C 1023 nt3.58□□□□□ -1.84
RPN11P43588 YPR050CYPR050C 414 nt3.58□□□□□ -1.84
RPN11P43588 OAF3YKR064W 2592 nt3.58□□□□□ -1.84
RPN11P43588 SLY41YOR307C 1362 nt3.58□□□□□ -1.84
RPN11P43588 OSW7YFR039C 1533 nt3.58□□□□□ -1.84
RPN11P43588 SSM4YIL030C 3960 nt3.58□□□□□ -1.84
RPN11P43588 MDM1YML104C 3384 nt3.57□□□□□ -1.84
RPN11P43588 RAX2YLR084C 3663 nt3.57□□□□□ -1.84
RPN11P43588 YDL199CYDL199C 2064 nt3.57□□□□□ -1.84
RPN11P43588 SNO3YFL060C 669 nt3.57□□□□□ -1.84
RPN11P43588 YGL109WYGL109W 324 nt3.57□□□□□ -1.84
RPN11P43588 SWD2YKL018W 990 nt3.57□□□□□ -1.84
RPN11P43588 COQ9YLR201C 783 nt3.57□□□□□ -1.84
RPN11P43588 CST9YLR394W 1449 nt3.57□□□□□ -1.84
RPN11P43588 SHH3YMR118C 591 nt3.57□□□□□ -1.84
RPN11P43588 RPL23AYBL087C 414 nt3.57□□□□□ -1.84
RPN11P43588 SNO2YNL334C 669 nt3.57□□□□□ -1.84
RPN11P43588 NEW1YPL226W 3591 nt3.57□□□□□ -1.84
RPN11P43588 KAR4YCL055W 1008 nt3.57□□□□□ -1.84
RPN11P43588 RAD18YCR066W 1464 nt3.56□□□□□ -1.84
RPN11P43588 PDR3YBL005W 2931 nt3.56□□□□□ -1.84
RPN11P43588 NNF1YJR112W 606 nt3.56□□□□□ -1.84
RPN11P43588 YLR050CYLR050C 486 nt3.56□□□□□ -1.84
RPN11P43588 YOR203WYOR203W 354 nt3.56□□□□□ -1.84
RPN11P43588 DGA1YOR245C 1257 nt3.56□□□□□ -1.84
RPN11P43588 YPL039WYPL039W 951 nt3.56□□□□□ -1.84
RPN11P43588 YCL002CYCL002C 792 nt3.56□□□□□ -1.84
RPN11P43588 TSR1YDL060W 2367 nt3.56□□□□□ -1.84
RPN11P43588 ILS1YBL076C 3219 nt3.56□□□□□ -1.84
RPN11P43588 CAF130YGR134W 3369 nt3.55□□□□□ -1.84
RPN11P43588 APL4YPR029C 2499 nt3.55□□□□□ -1.84
RPN11P43588 NOP56YLR197W 1515 nt3.55□□□□□ -1.84
RPN11P43588 CGR1YGL029W 363 nt3.55□□□□□ -1.84
RPN11P43588 RPL27AYHR010W 411 nt3.55□□□□□ -1.84
RPN11P43588 YHR097CYHR097C 1101 nt3.55□□□□□ -1.84
RPN11P43588 ATP11YNL315C 957 nt3.55□□□□□ -1.84
RPN11P43588 DDP1YOR163W 567 nt3.55□□□□□ -1.84
RPN11P43588 snR24snR24 89 nt3.55□□□□□ -1.84
RPN11P43588 DBP3YGL078C 1572 nt3.55□□□□□ -1.84
RPN11P43588 TAF6YGL112C 1551 nt3.55□□□□□ -1.84
RPN11P43588 CDC37YDR168W 1521 nt3.54□□□□□ -1.84
RPN11P43588 PSP1YDR505C 2526 nt3.54□□□□□ -1.84
RPN11P43588 AGE1YDR524C 1449 nt3.54□□□□□ -1.84
RPN11P43588 NMD2YHR077C 3270 nt3.54□□□□□ -1.84
RPN11P43588 YNL011CYNL011C 1335 nt3.54□□□□□ -1.84
RPN11P43588 FMP10YER182W 735 nt3.54□□□□□ -1.84
RPN11P43588 YFR010W-AYFR010W-A 189 nt3.54□□□□□ -1.84
RPN11P43588 QCR10YHR001W-A 234 nt3.54□□□□□ -1.84
RPN11P43588 CKA1YIL035C 1119 nt3.54□□□□□ -1.84
RPN11P43588 BRX1YOL077C 876 nt3.54□□□□□ -1.84
RPN11P43588 NRP1YDL167C 2160 nt3.53□□□□□ -1.84
RPN11P43588 KRE2YDR483W 1329 nt3.53□□□□□ -1.84
RPN11P43588 YPR003CYPR003C 2265 nt3.53□□□□□ -1.84
RPN11P43588 LOC1YFR001W 615 nt3.53□□□□□ -1.84
RPN11P43588 RPL30YGL030W 318 nt3.53□□□□□ -1.84
RPN11P43588 YHL005CYHL005C 393 nt3.53□□□□□ -1.84
RPN11P43588 SNX4YJL036W 1272 nt3.53□□□□□ -1.84
RPN11P43588 YKL065W-AYKL065W-A 222 nt3.53□□□□□ -1.84
RPN11P43588 PRM6YML047C 1059 nt3.53□□□□□ -1.84
RPN11P43588 BET5YML077W 480 nt3.53□□□□□ -1.84
RPN11P43588 ARG80YMR042W 534 nt3.53□□□□□ -1.84
RPN11P43588 RRP36YOR287C 903 nt3.53□□□□□ -1.84
RPN11P43588 YML096WYML096W 1578 nt3.53□□□□□ -1.84
RPN11P43588 YGL140CYGL140C 3660 nt3.53□□□□□ -1.84
RPN11P43588 ABP140YOR239W 1887 nt3.52□□□□□ -1.85
RPN11P43588 ESA1YOR244W 1338 nt3.52□□□□□ -1.85
RPN11P43588 SWI1YPL016W 3945 nt3.52□□□□□ -1.85
RPN11P43588 RIM1YCR028C-A 408 nt3.52□□□□□ -1.85
RPN11P43588 QRI7YDL104C 1224 nt3.52□□□□□ -1.85
RPN11P43588 NRG1YDR043C 696 nt3.52□□□□□ -1.85
RPN11P43588 MRPL49YJL096W 486 nt3.52□□□□□ -1.85
RPN11P43588 ASG7YJL170C 630 nt3.52□□□□□ -1.85
RPN11P43588 BUD19YJL188C 309 nt3.52□□□□□ -1.85
RPN11P43588 YLR177WYLR177W 1887 nt3.52□□□□□ -1.85
RPN11P43588 GPI1YGR216C 1830 nt3.51□□□□□ -1.85
RPN11P43588 SUC2YIL162W 1599 nt3.51□□□□□ -1.85
RPN11P43588 YPD1YDL235C 504 nt3.51□□□□□ -1.85
RPN11P43588 TGL2YDR058C 981 nt3.51□□□□□ -1.85
RPN11P43588 ECM11YDR446W 909 nt3.51□□□□□ -1.85
RPN11P43588 RSM18YER050C 417 nt3.51□□□□□ -1.85
RPN11P43588 YGR160WYGR160W 612 nt3.51□□□□□ -1.85
RPN11P43588 GOS1YHL031C 672 nt3.51□□□□□ -1.85
RPN11P43588 ATG10YLL042C 504 nt3.51□□□□□ -1.85
RPN11P43588 NNT1YLR285W 786 nt3.51□□□□□ -1.85
RPN11P43588 RPL6AYML073C 531 nt3.51□□□□□ -1.85
RPN11P43588 ARL1YBR164C 552 nt3.51□□□□□ -1.85
RPN11P43588 GRS2YPR081C 1857 nt3.51□□□□□ -1.85
RPN11P43588 MSB2YGR014W 3921 nt3.51□□□□□ -1.85
Retrieved 100 of 7,029 protein–RNA pairs in 81.3 ms