Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.26■□□□□ 0.83
LSM1O15116 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
LSM1O15116 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.26■□□□□ 0.83
LSM1O15116 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.26■□□□□ 0.83
LSM1O15116 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 AC073130.3-201ENST00000624389 2278 ntBASIC20.25■□□□□ 0.83
LSM1O15116 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LSM1O15116 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
LSM1O15116 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM1O15116 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.24■□□□□ 0.83
LSM1O15116 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LSM1O15116 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM1O15116 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.24■□□□□ 0.83
LSM1O15116 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM1O15116 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM1O15116 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM1O15116 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM1O15116 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LSM1O15116 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LSM1O15116 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LSM1O15116 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.23■□□□□ 0.83
LSM1O15116 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.23■□□□□ 0.83
LSM1O15116 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LSM1O15116 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.23■□□□□ 0.83
LSM1O15116 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.23■□□□□ 0.83
LSM1O15116 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.23■□□□□ 0.83
LSM1O15116 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.23■□□□□ 0.83
LSM1O15116 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.23■□□□□ 0.83
LSM1O15116 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM1O15116 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.22■□□□□ 0.83
LSM1O15116 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
LSM1O15116 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 AC009237.3-201ENST00000393279 1427 ntBASIC20.22■□□□□ 0.83
LSM1O15116 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LSM1O15116 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.22■□□□□ 0.83
LSM1O15116 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LSM1O15116 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.22■□□□□ 0.83
LSM1O15116 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM1O15116 AC131212.1-201ENST00000613771 668 ntBASIC20.22■□□□□ 0.83
LSM1O15116 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.22■□□□□ 0.83
LSM1O15116 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM1O15116 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM1O15116 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
LSM1O15116 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
LSM1O15116 AC055733.4-201ENST00000638462 1354 ntBASIC20.21■□□□□ 0.83
LSM1O15116 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
LSM1O15116 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
LSM1O15116 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LSM1O15116 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.21■□□□□ 0.83
LSM1O15116 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.21■□□□□ 0.83
LSM1O15116 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.21■□□□□ 0.83
LSM1O15116 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
LSM1O15116 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM1O15116 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
LSM1O15116 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.21■□□□□ 0.83
LSM1O15116 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LSM1O15116 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms