RNA–Protein interactions for RNA: ENST00000523430.5

SQLE-206, Transcript of squalene epoxidase, humanhuman

TSL 2 BASIC

Gene SQLE, Length 1,879 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-206ENST00000523430 NISCHQ9Y2I1 1504 aa46.92■■■■■ 5.1
SQLE-206ENST00000523430 CCDC180Q9P1Z9 1646 aa40.83■■■■■ 4.13
SQLE-206ENST00000523430 ZCCHC6Q5VYS8 1495 aaKnown RBP39.48■■■■□ 3.91
SQLE-206ENST00000523430 DCAF1Q9Y4B6 1507 aa38.73■■■■□ 3.79
SQLE-206ENST00000523430 DCAF8L2P0C7V8 631 aa38.69■■■■□ 3.78
SQLE-206ENST00000523430 ABCC9O60706 1549 aa38.54■■■■□ 3.76
SQLE-206ENST00000523430 SHROOM4Q9ULL8 1493 aa38.5■■■■□ 3.75
SQLE-206ENST00000523430 MYO15BQ96JP2 1530 aa38.18■■■■□ 3.7
SQLE-206ENST00000523430 NACADO15069 1562 aa37.95■■■■□ 3.67
SQLE-206ENST00000523430 SCRIBQ14160 1630 aa37.68■■■■□ 3.62
SQLE-206ENST00000523430 RB1CC1Q8TDY2 1594 aa37.61■■■■□ 3.61
SQLE-206ENST00000523430 SUPT5HO00267 1087 aaKnown RBP37.03■■■■□ 3.52
SQLE-206ENST00000523430 UNC13AQ9UPW8 1703 aa36.97■■■■□ 3.51
SQLE-206ENST00000523430 BICRAQ9NZM4 1560 aa36.56■■■■□ 3.44
SQLE-206ENST00000523430 CECR2Q9BXF3 1484 aa36.51■■■■□ 3.43
SQLE-206ENST00000523430 RSF1Q96T23 1441 aaPredicted RBP36.47■■■■□ 3.43
SQLE-206ENST00000523430 PABPN1Q86U42 306 aaKnown RBP eCLIP36.36■■■■□ 3.41
SQLE-206ENST00000523430 MROH2BQ7Z745 1585 aa36.31■■■■□ 3.4
SQLE-206ENST00000523430 BAZ1AQ9NRL2 1556 aaPredicted RBP36.2■■■■□ 3.39
SQLE-206ENST00000523430 SMARCA4P51532 1647 aa36.07■■■■□ 3.37
SQLE-206ENST00000523430 WIZO95785 1651 aa36.05■■■■□ 3.36
SQLE-206ENST00000523430 TOP2AP11388 1531 aaKnown RBP35.62■■■■□ 3.29
SQLE-206ENST00000523430 PEG3Q9GZU2 1588 aa35.58■■■■□ 3.29
SQLE-206ENST00000523430 CHIC1Q5VXU3 224 aa35.5■■■■□ 3.27
SQLE-206ENST00000523430 EIF4G1Q04637 1599 aaKnown RBP35.42■■■■□ 3.26
SQLE-206ENST00000523430 ATAD2BQ9ULI0 1458 aa35.4■■■■□ 3.26
SQLE-206ENST00000523430 SMARCA2P51531 1590 aa35.36■■■■□ 3.25
SQLE-206ENST00000523430 CCDC88BA6NC98 1476 aa35.26■■■■□ 3.23
SQLE-206ENST00000523430 BAZ1BQ9UIG0 1483 aaKnown RBP35.23■■■■□ 3.23
SQLE-206ENST00000523430 HMGXB3Q12766 1538 aa35.03■■■■□ 3.2
SQLE-206ENST00000523430 NCAPD3P42695 1498 aa35.02■■■■□ 3.2
SQLE-206ENST00000523430 CC2D2AQ9P2K1 1620 aa34.87■■■■□ 3.17
SQLE-206ENST00000523430 TRIM41Q8WV44 630 aa34.75■■■■□ 3.15
SQLE-206ENST00000523430 ABCC8Q09428 1581 aa34.66■■■■□ 3.14
SQLE-206ENST00000523430 CFTRP13569 1480 aa34.32■■■■□ 3.08
SQLE-206ENST00000523430 WRNQ14191 1432 aaPredicted RBP eCLIP34.31■■■■□ 3.08
SQLE-206ENST00000523430 SYNJ1O43426 1573 aa34.26■■■■□ 3.07
SQLE-206ENST00000523430 FAM9AQ8IZU1 332 aaPredicted RBP34.21■■■■□ 3.07
SQLE-206ENST00000523430 PRDM2Q13029 1718 aa34.2■■■■□ 3.06
SQLE-206ENST00000523430 LOC105371045A0A1W2PR82 267 aa34.19■■■■□ 3.06
SQLE-206ENST00000523430 CADPSQ9ULU8 1353 aa34.14■■■■□ 3.06
SQLE-206ENST00000523430 TOP2BQ02880 1626 aa34.03■■■■□ 3.04
SQLE-206ENST00000523430 BIVM-ERCC5R4GMW8 1640 aa34.01■■■■□ 3.03
SQLE-206ENST00000523430 SOGA1O94964 1423 aa33.99■■■■□ 3.03
SQLE-206ENST00000523430 DNAJC5BQ9UF47 199 aa33.99■■■■□ 3.03
SQLE-206ENST00000523430 CUX1P39880 1505 aa33.95■■■■□ 3.02
SQLE-206ENST00000523430 NESP48681 1621 aa33.91■■■■□ 3.02
SQLE-206ENST00000523430 RUSC2Q8N2Y8 1516 aa33.88■■■■□ 3.01
SQLE-206ENST00000523430 LAMC3Q9Y6N6 1575 aa33.83■■■■□ 3.01
SQLE-206ENST00000523430 EEA1Q15075 1411 aa33.82■■■■□ 3
SQLE-206ENST00000523430 FANCD2Q9BXW9 1451 aa33.82■■■■□ 3
SQLE-206ENST00000523430 EHMT2Q96KQ7 1210 aa33.8■■■■□ 3
SQLE-206ENST00000523430 CSRNP3Q8WYN3 585 aa33.63■■■□□ 2.97
SQLE-206ENST00000523430 CEP164Q9UPV0 1460 aa33.59■■■□□ 2.97
SQLE-206ENST00000523430 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
SQLE-206ENST00000523430 FGD5Q6ZNL6 1462 aa33.53■■■□□ 2.96
SQLE-206ENST00000523430 PDS5BQ9NTI5 1447 aa33.52■■■□□ 2.96
SQLE-206ENST00000523430 KIF21AQ7Z4S6 1674 aa33.51■■■□□ 2.95
SQLE-206ENST00000523430 TOPBP1Q92547 1522 aa33.48■■■□□ 2.95
SQLE-206ENST00000523430 KIF21BO75037 1637 aa33.48■■■□□ 2.95
SQLE-206ENST00000523430 GOLGA3Q08378 1498 aa33.45■■■□□ 2.94
SQLE-206ENST00000523430 URB2Q14146 1524 aaKnown RBP33.43■■■□□ 2.94
SQLE-206ENST00000523430 KIF27Q86VH2 1401 aa33.4■■■□□ 2.94
SQLE-206ENST00000523430 POLA1P09884 1462 aaPredicted RBP33.35■■■□□ 2.93
SQLE-206ENST00000523430 CUX2O14529 1486 aa33.33■■■□□ 2.93
SQLE-206ENST00000523430 TNIKQ9UKE5 1360 aa33.32■■■□□ 2.93
SQLE-206ENST00000523430 RAPGEF2Q9Y4G8 1499 aa33.3■■■□□ 2.92
SQLE-206ENST00000523430 RAD54L2Q9Y4B4 1467 aa33.26■■■□□ 2.92
SQLE-206ENST00000523430 PRXQ9BXM0 1461 aa33.25■■■□□ 2.91
SQLE-206ENST00000523430 UBTFP17480 764 aaKnown RBP33.25■■■□□ 2.91
SQLE-206ENST00000523430 CEP162Q5TB80 1403 aa33.24■■■□□ 2.91
SQLE-206ENST00000523430 ERICH3Q5RHP9 1530 aa33.2■■■□□ 2.9
SQLE-206ENST00000523430 ABCA10Q8WWZ4 1543 aa33.2■■■□□ 2.9
SQLE-206ENST00000523430 WDR97A6NE52 1622 aa33.15■■■□□ 2.9
SQLE-206ENST00000523430 MRC2Q9UBG0 1479 aa33.15■■■□□ 2.9
SQLE-206ENST00000523430 IGF1RP08069 1367 aa33.08■■■□□ 2.89
SQLE-206ENST00000523430 WDR62O43379 1518 aa33■■■□□ 2.87
SQLE-206ENST00000523430 TARBP1Q13395 1621 aaKnown RBP32.99■■■□□ 2.87
SQLE-206ENST00000523430 ERCC6Q03468 1493 aa32.99■■■□□ 2.87
SQLE-206ENST00000523430 ABCA5Q8WWZ7 1642 aa32.97■■■□□ 2.87
SQLE-206ENST00000523430 CLIP1P30622 1438 aa32.92■■■□□ 2.86
SQLE-206ENST00000523430 CARMIL1Q5VZK9 1371 aa32.92■■■□□ 2.86
SQLE-206ENST00000523430 THOC2Q8NI27 1593 aaKnown RBP32.9■■■□□ 2.86
SQLE-206ENST00000523430 TDRD9Q8NDG6 1382 aaKnown RBP32.88■■■□□ 2.85
SQLE-206ENST00000523430 CUL7Q14999 1698 aa32.86■■■□□ 2.85
SQLE-206ENST00000523430 GAPVD1Q14C86 1478 aa32.84■■■□□ 2.85
SQLE-206ENST00000523430 PCGF6Q9BYE7 350 aa32.78■■■□□ 2.84
SQLE-206ENST00000523430 RANGAP1P46060 587 aaPredicted RBP32.77■■■□□ 2.84
SQLE-206ENST00000523430 IFT140Q96RY7 1462 aa32.74■■■□□ 2.83
SQLE-206ENST00000523430 PBRM1Q86U86 1689 aa32.71■■■□□ 2.83
SQLE-206ENST00000523430 AQRO60306 1485 aaKnown RBP eCLIP32.66■■■□□ 2.824e-12■■■■□ 26.3
SQLE-206ENST00000523430 TRIM26Q12899 539 aaPredicted RBP32.66■■■□□ 2.82
SQLE-206ENST00000523430 VPS8Q8N3P4 1428 aa32.65■■■□□ 2.82
SQLE-206ENST00000523430 ZNF608Q9ULD9 1512 aaPredicted RBP32.65■■■□□ 2.82
SQLE-206ENST00000523430 PPARGC1BQ86YN6 1023 aaKnown RBP32.65■■■□□ 2.82
SQLE-206ENST00000523430 ARAP1Q96P48 1450 aa32.64■■■□□ 2.82
SQLE-206ENST00000523430 ARHGAP35Q9NRY4 1499 aa32.58■■■□□ 2.81
SQLE-206ENST00000523430 CTTNBP2Q8WZ74 1663 aa32.56■■■□□ 2.8
SQLE-206ENST00000523430 EIF4G3O43432 1585 aaKnown RBP32.56■■■□□ 2.8
SQLE-206ENST00000523430 ADAMTS12P58397 1594 aa32.54■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms