Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LSM1O15116 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.48■□□□□ 0.87
LSM1O15116 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LSM1O15116 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
LSM1O15116 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.48■□□□□ 0.87
LSM1O15116 AC003102.1-202ENST00000563394 1796 ntBASIC20.48■□□□□ 0.87
LSM1O15116 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LSM1O15116 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LSM1O15116 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM1O15116 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.47■□□□□ 0.87
LSM1O15116 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
LSM1O15116 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.47■□□□□ 0.87
LSM1O15116 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.47■□□□□ 0.87
LSM1O15116 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LSM1O15116 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.47■□□□□ 0.87
LSM1O15116 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
LSM1O15116 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.47■□□□□ 0.87
LSM1O15116 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LSM1O15116 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.46■□□□□ 0.87
LSM1O15116 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.46■□□□□ 0.87
LSM1O15116 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
LSM1O15116 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LSM1O15116 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LSM1O15116 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LSM1O15116 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
LSM1O15116 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.45■□□□□ 0.86
LSM1O15116 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LSM1O15116 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.44■□□□□ 0.86
LSM1O15116 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.44■□□□□ 0.86
LSM1O15116 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.44■□□□□ 0.86
LSM1O15116 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM1O15116 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
LSM1O15116 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
LSM1O15116 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.43■□□□□ 0.86
LSM1O15116 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.43■□□□□ 0.86
LSM1O15116 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.43■□□□□ 0.86
LSM1O15116 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.43■□□□□ 0.86
LSM1O15116 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.43■□□□□ 0.86
LSM1O15116 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
LSM1O15116 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LSM1O15116 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LSM1O15116 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LSM1O15116 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LSM1O15116 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.42■□□□□ 0.86
LSM1O15116 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.42■□□□□ 0.86
LSM1O15116 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.42■□□□□ 0.86
LSM1O15116 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LSM1O15116 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM1O15116 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms